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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter sp. FW510-T8
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
OKGIIK_07835 and rlmD are separated by 159 nucleotides
rlmD and ydbL are separated by 143 nucleotides
ydbL and OKGIIK_07850 are separated by 41 nucleotides
OKGIIK_07850 and OKGIIK_07855 are separated by 45 nucleotides
OKGIIK_07835: OKGIIK_07835 - CYTH domain protein, at 1,734,432 to 1,734,953
_07835
OKGIIK_07840: rlmD - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 1,735,113 to 1,736,450
rlmD
OKGIIK_07845: ydbL - DUF1318 domain-containing protein, at 1,736,594 to 1,737,196
ydbL
OKGIIK_07850: OKGIIK_07850 - hypothetical protein, at 1,737,238 to 1,739,259
_07850
OKGIIK_07855: OKGIIK_07855 - Histidine kinase, at 1,739,305 to 1,740,042
_07855
Group
Condition
OKGIIK
_07835
OKGIIK
_07840
OKGIIK
_07845
OKGIIK
_07850
OKGIIK
_07855
rlmD
ydbL
no stress control
no stress control
-0.4
-0.6
+0.3
-0.2
-1.9
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-0.2
-0.6
+0.0
+0.0
+0.2
stress
R2A_PIPES with Aluminum chloride 0.28125 mM
-0.3
+0.0
-0.1
-0.4
+0.3
stress
R2A_PIPES with Cobalt chloride 512 uM
-0.2
-0.1
-0.1
-0.2
+0.2
no stress control
no stress control
-0.2
+0.1
-0.2
-0.1
+0.2
no stress control
no stress control
+0.1
+0.3
+0.1
+0.1
-0.8
stress
R2A_PIPES with Aluminum chloride 0.28125 mM
+0.0
-0.4
-0.1
-0.2
+0.5
pH
R2A_PIPES pH 4.25
+0.2
-0.3
-0.1
+0.0
+0.1
no stress control
no stress control
-0.1
+0.1
-0.0
-0.0
+0.2
no stress control
no stress control
-0.3
-0.5
-0.1
+0.1
+0.9
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
+0.1
-0.2
+0.2
-0.2
+0.2
pH
R2A_PIPES pH 4
+0.1
+0.0
-0.2
-0.2
+0.5
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.3
-0.1
+0.0
-0.0
+0.1
stress
R2A_PIPES with Cobalt chloride 1024 uM
+0.0
+0.0
-0.4
-0.2
+0.8
stress
R2A_PIPES with Nickel (II) chloride 424 uM
-0.0
-0.0
-0.4
-0.2
+1.0
no stress control
no stress control
-0.1
-0.0
-0.1
+0.1
+0.6
no stress control
no stress control
+0.0
-0.0
-0.0
-0.1
+0.6
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.5
-0.1
+0.0
+0.3
-0.2
pH
R2A_PIPES pH 4.5
+0.4
+0.2
-0.2
-0.1
+0.1
no stress control
no stress control
-0.4
+0.2
+0.1
+0.2
+0.3
pH
R2A_PIPES pH 4
+0.2
-0.2
-0.0
-0.3
+0.8
no stress control
no stress control
+0.2
+0.2
-0.2
+0.1
+0.3
stress
R2A_PIPES with Cobalt chloride 512 uM
+0.0
+0.0
-0.0
+0.1
+0.5
stress
R2A_PIPES with Cadmium chloride 128 uM
-0.0
+0.1
-0.1
+0.3
+0.5
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
-0.0
+0.1
-0.1
-0.1
+1.0
pH
R2A_PIPES pH 4.25
+0.3
+0.3
-0.2
+0.1
+0.5
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
+0.3
-0.1
+0.1
-0.0
+0.6
pH
R2A_PIPES pH 4.5
+0.5
+0.3
-0.1
-0.2
+0.6
stress
R2A_PIPES with Cobalt chloride 1024 uM
+0.2
+0.3
-0.3
-0.2
+1.3
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