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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter sp. FW510-T8
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
OKGIIK_06025 and cusA overlap by 4 nucleotides
cusA and ompR are separated by 5 nucleotides
ompR and OKGIIK_06040 overlap by 11 nucleotides
OKGIIK_06040 and OKGIIK_06045 are separated by 84 nucleotides
OKGIIK_06025: OKGIIK_06025 - Multidrug transporter, at 1,326,814 to 1,327,863
_06025
OKGIIK_06030: cusA - CusA/CzcA family heavy metal efflux RND transporter, at 1,327,860 to 1,330,994
cusA
OKGIIK_06035: ompR - DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain, at 1,331,000 to 1,331,680
ompR
OKGIIK_06040: OKGIIK_06040 - Histidine kinase, at 1,331,670 to 1,332,914
_06040
OKGIIK_06045: OKGIIK_06045 - MFS transporter, at 1,332,999 to 1,334,180
_06045
Group
Condition
OKGIIK
_06025
OKGIIK
_06030
OKGIIK
_06035
OKGIIK
_06040
OKGIIK
_06045
cusA
ompR
stress
R2A_PIPES with Nickel (II) chloride 424 uM
-0.2
-0.1
-0.3
-0.3
-0.3
no stress control
no stress control
+0.0
-0.2
-0.0
-0.4
-0.3
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
-0.1
-0.1
-0.3
-0.1
-0.2
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
-0.1
-0.1
+0.1
-0.4
-0.3
stress
R2A_PIPES with Cobalt chloride 1024 uM
-0.0
-0.1
-0.1
-0.0
-0.3
no stress control
no stress control
-0.4
+0.0
+0.0
-0.2
-0.1
stress
R2A_PIPES with Cobalt chloride 512 uM
-0.2
+0.0
-0.1
-0.1
-0.1
stress
R2A_PIPES with Cobalt chloride 1024 uM
+0.3
+0.1
-0.2
-0.2
-0.4
stress
R2A_PIPES with Cadmium chloride 128 uM
-0.3
+0.3
-0.5
+0.1
+0.0
stress
R2A_PIPES with Aluminum chloride 0.28125 mM
-0.1
-0.0
-0.1
-0.1
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
-0.1
-0.1
-0.1
+0.1
pH
R2A_PIPES pH 4.25
-0.2
+0.0
-0.1
+0.1
-0.1
no stress control
no stress control
-0.2
+0.1
-0.3
+0.2
-0.2
no stress control
no stress control
+0.1
-0.1
-0.3
+0.1
+0.1
no stress control
no stress control
-0.2
+0.1
-0.1
+0.1
-0.1
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
+0.1
-0.1
-0.2
-0.1
-0.0
stress
R2A_PIPES with Aluminum chloride 0.28125 mM
-0.1
-0.0
+0.3
+0.0
-0.3
stress
R2A_PIPES with Cobalt chloride 512 uM
-0.2
-0.0
-0.2
-0.1
+0.4
pH
R2A_PIPES pH 4.5
-0.0
+0.1
-0.1
+0.0
-0.1
pH
R2A_PIPES pH 4.25
+0.0
+0.2
-0.2
-0.1
+0.1
no stress control
no stress control
-0.1
-0.0
+0.1
-0.1
+0.1
no stress control
no stress control
-0.1
+0.0
+0.2
-0.0
-0.0
pH
R2A_PIPES pH 4
+0.2
+0.1
-0.2
+0.2
-0.2
no stress control
no stress control
-0.2
-0.1
+0.3
-0.0
+0.2
no stress control
no stress control
+0.0
-0.0
+0.5
-0.3
+0.0
pH
R2A_PIPES pH 4
+0.2
+0.1
+0.3
+0.1
-0.5
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
+0.3
+0.1
-0.1
+0.1
-0.1
pH
R2A_PIPES pH 4.5
-0.1
+0.1
+0.3
-0.0
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.0
+0.1
+0.5
-0.2
+0.0
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