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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter sp. FW510-T8
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
trpA and accD are separated by 51 nucleotides
accD and OKGIIK_04860 are separated by 426 nucleotides
OKGIIK_04860 and OKGIIK_04865 overlap by 32 nucleotides
OKGIIK_04865 and OKGIIK_04870 are separated by 112 nucleotides
OKGIIK_04850: trpA - tryptophan synthase subunit alpha, at 1,054,864 to 1,055,664
trpA
OKGIIK_04855: accD - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 1,055,716 to 1,056,585
accD
OKGIIK_04860: OKGIIK_04860 - phosphatase PAP2 family protein, at 1,057,012 to 1,057,575
_04860
OKGIIK_04865: OKGIIK_04865 - Glycosyl transferase, at 1,057,544 to 1,058,704
_04865
OKGIIK_04870: OKGIIK_04870 - Rod shape-determining protein RodA, at 1,058,817 to 1,059,254
_04870
Group
Condition
OKGIIK
_04850
OKGIIK
_04855
OKGIIK
_04860
OKGIIK
_04865
OKGIIK
_04870
trpA
accD
stress
R2A_PIPES with Cobalt chloride 1024 uM
-3.0
N.D.
-0.6
-0.4
+0.4
no stress control
no stress control
-2.5
N.D.
-0.4
-0.2
+0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-1.7
N.D.
-0.2
-0.3
-0.2
stress
R2A_PIPES with Cobalt chloride 512 uM
-1.3
N.D.
-0.8
-0.1
-0.0
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
-1.4
N.D.
-0.2
-0.4
-0.2
no stress control
no stress control
-2.1
N.D.
-0.1
+0.1
-0.0
stress
R2A_PIPES with Cobalt chloride 512 uM
-1.5
N.D.
-0.1
-0.2
-0.2
no stress control
no stress control
-1.5
N.D.
-0.3
-0.1
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-1.6
N.D.
-0.3
+0.1
-0.0
stress
R2A_PIPES with Aluminum chloride 0.28125 mM
-2.0
N.D.
+0.0
+0.3
-0.0
stress
R2A_PIPES with Nickel (II) chloride 424 uM
-1.4
N.D.
-0.5
+0.0
+0.1
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-1.6
N.D.
-0.2
-0.1
+0.1
no stress control
no stress control
-1.4
N.D.
-0.3
-0.1
+0.1
no stress control
no stress control
-1.1
N.D.
-0.1
-0.3
-0.1
stress
R2A_PIPES with Cadmium chloride 128 uM
-1.5
N.D.
-0.3
-0.1
+0.4
pH
R2A_PIPES pH 4.5
-1.2
N.D.
-0.4
+0.1
+0.2
no stress control
no stress control
-1.3
N.D.
-0.3
-0.1
+0.3
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
-0.6
N.D.
-0.7
+0.1
-0.1
stress
R2A_PIPES with Cobalt chloride 1024 uM
-1.3
N.D.
-0.2
-0.2
+0.5
no stress control
no stress control
-1.3
N.D.
+0.3
-0.1
-0.1
no stress control
no stress control
-1.2
N.D.
-0.2
+0.1
+0.2
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-0.9
N.D.
-0.3
-0.0
+0.2
pH
R2A_PIPES pH 4.5
-0.8
N.D.
-0.3
-0.0
+0.2
no stress control
no stress control
-0.5
N.D.
-0.5
-0.2
+0.3
pH
R2A_PIPES pH 4
-0.8
N.D.
+0.0
-0.2
+0.2
stress
R2A_PIPES with Aluminum chloride 0.28125 mM
-0.8
N.D.
+0.1
-0.3
+0.3
pH
R2A_PIPES pH 4
-0.8
N.D.
-0.3
+0.3
+0.2
pH
R2A_PIPES pH 4.25
-0.4
N.D.
-0.2
+0.0
-0.1
pH
R2A_PIPES pH 4.25
-0.7
N.D.
-0.0
+0.0
+0.4
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