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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter sp. FW510-T8
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
OKGIIK_04035 and OKGIIK_04040 are separated by 4 nucleotides
OKGIIK_04040 and caiA are separated by 7 nucleotides
caiA and gdhA are separated by 120 nucleotides
gdhA and OKGIIK_04055 are separated by 228 nucleotides
OKGIIK_04035: OKGIIK_04035 - DeoR/GlpR family DNA-binding transcription regulator, at 884,310 to 884,690
_04035
OKGIIK_04040: OKGIIK_04040 - Beta-galactosidase, at 884,695 to 886,419
_04040
OKGIIK_04045: caiA - acyl-CoA dehydrogenase, at 886,427 to 887,584
caiA
OKGIIK_04050: gdhA - leucine dehydrogenase, at 887,705 to 888,808
gdhA
OKGIIK_04055: OKGIIK_04055 - Putative signal peptide protein, at 889,037 to 889,363
_04055
Group
Condition
OKGIIK
_04035
OKGIIK
_04040
OKGIIK
_04045
OKGIIK
_04050
OKGIIK
_04055
caiA
gdhA
pH
R2A_HOMOPIPES; pH4.5
-1.4
-0.1
-0.0
-0.1
-0.9
pH
R2A_HOMOPIPES; pH4.25
-1.9
+0.1
-0.0
+0.0
-0.6
nutrient
NLDM_defined_nocarbon with D-Glucose and 20AA_mix 0.1X
-1.6
+0.0
+0.0
-0.3
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM
-0.8
-0.0
-0.5
-0.4
-0.1
nutrient
NLDM_defined_nocarbon with D-Glucose and L-Methionine 1 mM
-1.3
-0.0
+0.0
-0.5
+0.1
no nutrient control
NLDM_defined_nocarbon with D-Glucose
-1.7
-0.1
+0.1
-0.4
+0.4
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-0.6
-0.1
-0.3
-0.2
-0.5
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-1.2
+0.0
-0.1
-0.2
-0.1
nutrient
NLDM_defined_nocarbon with D-Glucose and 20AA_mix 0.1X
-0.7
-0.0
-0.1
-0.4
-0.4
no stress control
R2A_PIPES; no stress control
-1.1
-0.0
-0.5
-0.0
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.8
+0.0
-0.1
-0.3
-0.3
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
-1.0
-0.1
-0.1
-0.1
-0.1
stress
R2A_PIPES with Cobalt chloride 1024 uM
-1.0
+0.0
-0.3
-0.2
+0.1
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-0.8
+0.0
-0.5
-0.1
+0.0
no stress control
no stress control
-1.2
-0.1
+0.1
-0.0
+0.0
nutrient
NLDM_defined_nocarbon with D-Glucose and L-Methionine 1 mM
-0.5
-0.0
-0.1
-0.6
+0.2
no stress control
no stress control
+0.2
-0.0
-0.6
-0.1
-0.6
no stress control
R2A_PIPES; no stress control
-0.7
-0.1
-0.3
-0.1
+0.2
stress
R2A_PIPES with Zinc chloride 320 uM
-0.7
+0.0
-0.3
-0.2
+0.1
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-1.1
+0.1
-0.1
+0.1
+0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM
+0.4
-0.1
-0.5
-0.6
-0.1
stress
R2A_PIPES with Zinc chloride 640 uM
-0.6
-0.2
-0.2
+0.0
+0.3
no nutrient control
NLDM_defined_nocarbon with D-Glucose
-0.9
+0.1
-0.1
-0.3
+0.6
nutrient
NLDM_defined_nocarbon with D-Glucose and 20AA_mix 0.1X
-0.7
+0.1
-0.1
-0.2
+0.3
no stress control
R2A_PIPES; no stress control
+0.6
-0.0
-0.3
-0.1
-0.5
stress
R2A_PIPES with Nickel (II) chloride 424 uM
-0.7
-0.0
+0.1
-0.0
+0.8
pH
R2A_MES; pH5
-0.6
-0.1
-0.0
+0.5
+0.4
stress
R2A_PIPES with Zinc chloride 640 uM
+0.5
-0.1
-0.2
-0.1
+0.6
pH
R2A_HOMOPIPES; pH4.25
+0.8
-0.1
-0.1
-0.2
+0.6
pH
R2A_HOMOPIPES; pH5
+0.3
-0.0
-0.1
+0.5
+0.4
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