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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter sp. FW510-T8
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
phoR and phoB are separated by 40 nucleotides
phoB and OKGIIK_03795 are separated by 90 nucleotides
OKGIIK_03795 and grxC are separated by 127 nucleotides
grxC and yurZ overlap by 4 nucleotides
OKGIIK_03785: phoR - phosphate regulon sensor histidine kinase PhoR, at 835,701 to 837,008
phoR
OKGIIK_03790: phoB - phosphate regulon transcriptional regulator PhoB, at 837,049 to 837,738
phoB
OKGIIK_03795: OKGIIK_03795 - Putative beta-barrel assembly-enhancing protease, at 837,829 to 839,532
_03795
OKGIIK_03800: grxC - glutaredoxin 3, at 839,660 to 839,923
grxC
OKGIIK_03805: yurZ - carboxymuconolactone decarboxylase family protein, at 839,920 to 840,306
yurZ
Group
Condition
OKGIIK
_03785
OKGIIK
_03790
OKGIIK
_03795
OKGIIK
_03800
OKGIIK
_03805
phoR
phoB
grxC
yurZ
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-2.5
-2.2
-1.5
-0.2
+0.1
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-2.5
-0.6
-1.4
-0.2
+0.0
stress
R2A_PIPES with Cobalt chloride 1024 uM
+0.4
+0.3
-2.9
-1.2
+0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
+0.2
-2.0
-1.1
-0.0
stress
R2A_PIPES with Cobalt chloride 1024 uM
+0.5
+0.1
-2.7
-0.9
-0.0
no stress control
no stress control
-0.8
-0.1
-1.3
-0.4
+0.0
stress
R2A_PIPES with Aluminum chloride 0.28125 mM
-0.3
+0.0
-1.5
-0.8
+0.0
stress
R2A_PIPES with Cobalt chloride 512 uM
-0.4
+0.2
-1.8
-0.3
+0.2
no stress control
no stress control
-0.6
+0.4
-0.9
-1.3
+0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.4
-0.1
-1.9
-0.3
+0.1
no stress control
no stress control
-0.5
-0.1
-1.4
+0.2
+0.1
stress
R2A_PIPES with Nickel (II) chloride 424 uM
-0.0
+0.1
-1.2
-0.2
-0.1
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
+0.0
-0.1
-1.1
-0.2
+0.0
no stress control
no stress control
-0.3
-0.1
-1.2
-0.1
+0.3
pH
R2A_PIPES pH 4
-0.1
-0.4
-0.7
-0.1
-0.1
no stress control
no stress control
-0.5
-0.1
-1.1
+0.2
+0.1
stress
R2A_PIPES with Aluminum chloride 0.28125 mM
-0.2
+0.1
-1.1
-0.2
+0.1
no stress control
no stress control
+0.0
+0.0
-1.1
-0.1
-0.1
no stress control
no stress control
-0.0
+0.0
-1.3
-0.2
+0.1
stress
R2A_PIPES with Cobalt chloride 512 uM
-0.1
+0.4
-1.6
+0.0
+0.1
no stress control
no stress control
-0.2
+0.0
-0.9
+0.3
+0.0
no stress control
no stress control
-0.3
+0.2
-1.1
+0.3
+0.1
pH
R2A_PIPES pH 4.25
-0.1
+0.1
-0.9
+0.1
+0.2
pH
R2A_PIPES pH 4.5
-0.3
+0.1
-0.3
-0.1
+0.0
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
+0.5
+0.0
-1.1
-0.1
+0.1
pH
R2A_PIPES pH 4.25
-0.1
+0.3
-0.5
-0.1
-0.0
stress
R2A_PIPES with Cadmium chloride 128 uM
+0.5
+0.0
-0.7
-0.1
+0.2
pH
R2A_PIPES pH 4
+1.1
+0.0
-0.3
-0.5
+0.2
pH
R2A_PIPES pH 4.5
+0.4
+0.1
-0.2
-0.0
+0.2
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