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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter sp. FW510-T8
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
gatA and cysD are separated by 214 nucleotides
cysD and OKGIIK_01300 overlap by 1 nucleotides
OKGIIK_01300 and gcvT are separated by 55 nucleotides
gcvT and gcvH are separated by 91 nucleotides
OKGIIK_01290: gatA - amidase, at 284,127 to 285,524
gatA
OKGIIK_01295: cysD - sulfate adenylyltransferase subunit CysD, at 285,739 to 286,656
cysD
OKGIIK_01300: OKGIIK_01300 - Multifunctional fusion protein, at 286,656 to 288,530
_01300
OKGIIK_01305: gcvT - glycine cleavage system aminomethyltransferase GcvT, at 288,586 to 289,719
gcvT
OKGIIK_01310: gcvH - glycine cleavage system protein GcvH, at 289,811 to 290,206
gcvH
Group
Condition
OKGIIK
_01290
OKGIIK
_01295
OKGIIK
_01300
OKGIIK
_01305
OKGIIK
_01310
gatA
cysD
gcvT
gcvH
stress
R2A_PIPES with Cobalt chloride 1024 uM
-0.5
-0.1
+0.1
-1.4
-2.7
no stress control
no stress control
-0.2
+0.2
+0.1
-0.1
-4.2
stress
R2A_PIPES with Cobalt chloride 1024 uM
-0.1
+0.3
+0.2
-1.5
-2.7
no stress control
no stress control
-0.1
+0.1
+0.2
-1.7
-1.8
stress
R2A_PIPES with Cobalt chloride 512 uM
-0.1
+0.3
+0.2
-1.5
-1.9
no stress control
no stress control
-0.1
-0.0
+0.1
-0.9
-2.0
stress
R2A_PIPES with Nickel (II) chloride 424 uM
+0.1
+0.1
-0.1
-0.7
-2.3
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-0.1
+0.1
+0.1
-0.0
-2.7
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
-0.2
+0.1
+0.2
-0.9
-1.7
no stress control
no stress control
-0.1
+0.0
-0.0
-0.5
-1.7
no stress control
no stress control
-0.1
+0.2
-0.0
-0.2
-2.0
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
+0.2
+0.4
+0.2
-0.5
-2.0
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
+0.2
+0.2
+0.1
-0.1
-2.0
pH
R2A_PIPES pH 4
-0.8
+0.9
+0.8
-1.1
-1.4
no stress control
no stress control
-0.1
+0.2
-0.0
-0.6
-1.0
no stress control
no stress control
-0.0
+0.2
+0.2
-0.1
-1.8
pH
R2A_PIPES pH 4
-0.2
+0.8
+0.5
-1.3
-1.3
stress
R2A_PIPES with Cadmium chloride 128 uM
+0.5
+0.2
+0.2
-0.2
-1.9
stress
R2A_PIPES with Aluminum chloride 0.28125 mM
+0.5
+0.3
+0.2
-0.2
-2.0
stress
R2A_PIPES with Aluminum chloride 0.28125 mM
-0.1
-0.1
+0.4
+0.4
-1.7
stress
R2A_PIPES with Cobalt chloride 512 uM
+0.1
+0.2
+0.3
-0.2
-1.6
no stress control
no stress control
+0.2
+0.3
+0.1
-0.3
-1.4
no stress control
no stress control
-0.1
+0.1
+0.0
-0.1
-1.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
+0.7
+0.5
+0.7
-2.5
pH
R2A_PIPES pH 4.25
-0.2
+1.1
+1.0
-0.1
-1.8
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
+0.6
+0.6
+0.7
-1.4
pH
R2A_PIPES pH 4.25
+0.0
+1.1
+1.1
+0.0
-1.8
pH
R2A_PIPES pH 4.5
-0.0
+1.8
+1.7
-0.8
-1.9
pH
R2A_PIPES pH 4.5
-0.1
+1.6
+1.5
-0.0
-1.2
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