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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter sp. FW510-T8
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
ycgM and hemN are separated by 97 nucleotides
hemN and crp are separated by 32 nucleotides
crp and OKGIIK_00810 are separated by 30 nucleotides
OKGIIK_00810 and OKGIIK_00815 are separated by 33 nucleotides
OKGIIK_00795: ycgM - 2-keto-4-pentenoate hydratase, at 176,628 to 177,614
ycgM
OKGIIK_00800: hemN - oxygen-independent coproporphyrinogen III oxidase, at 177,712 to 179,112
hemN
OKGIIK_00805: crp - cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases, at 179,145 to 179,906
crp
OKGIIK_00810: OKGIIK_00810 - Universal stress protein UspA, at 179,937 to 180,782
_00810
OKGIIK_00815: OKGIIK_00815 - GNAT family acetyltransferase, at 180,816 to 181,388
_00815
Group
Condition
OKGIIK
_00795
OKGIIK
_00800
OKGIIK
_00805
OKGIIK
_00810
OKGIIK
_00815
ycgM
hemN
crp
no stress control
no stress control
-2.0
-0.2
-0.4
-0.4
-0.0
stress
R2A_PIPES with Nickel (II) chloride 424 uM
-2.1
-0.1
-0.0
-0.2
-0.2
stress
R2A_PIPES with Cobalt chloride 512 uM
-1.7
-0.1
+0.1
-0.5
+0.3
stress
R2A_PIPES with Cobalt chloride 1024 uM
-1.6
-0.2
+0.1
-0.4
+0.3
no stress control
no stress control
-1.7
-0.1
-0.2
-0.2
+0.4
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
-1.5
-0.1
-0.1
-0.2
+0.2
no stress control
no stress control
-1.7
-0.0
-0.0
+0.1
+0.2
no stress control
no stress control
-1.5
+0.1
-0.2
+0.2
-0.0
stress
R2A_PIPES with Cobalt chloride 512 uM
-1.1
-0.0
-0.2
-0.2
+0.3
stress
R2A_PIPES with Aluminum chloride 0.28125 mM
-0.9
-0.3
+0.1
+0.1
-0.0
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
-1.1
-0.2
+0.1
-0.2
+0.4
no stress control
no stress control
-1.0
-0.1
+0.3
-0.2
+0.1
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-1.3
-0.0
-0.0
+0.3
+0.2
no stress control
no stress control
-1.4
-0.0
+0.0
-0.1
+0.7
stress
R2A_PIPES with Cobalt chloride 1024 uM
-1.1
-0.1
-0.3
+0.2
+0.6
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.5
-0.2
-0.3
+0.0
+0.3
pH
R2A_PIPES pH 4
-0.9
+0.3
+0.3
-0.1
-0.2
no stress control
no stress control
-1.0
-0.2
-0.0
+0.1
+0.6
no stress control
no stress control
-0.9
+0.0
+0.1
-0.0
+0.3
pH
R2A_PIPES pH 4
-0.4
+0.3
-0.0
-0.3
+0.3
stress
R2A_PIPES with Cadmium chloride 128 uM
+0.6
-0.0
-0.5
-0.4
+0.2
no stress control
no stress control
-0.3
-0.1
+0.1
-0.1
+0.4
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
-0.4
+0.1
+0.0
-0.3
+0.6
stress
R2A_PIPES with Aluminum chloride 0.28125 mM
-0.3
-0.0
+0.1
+0.1
+0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
+0.0
-0.1
+0.0
+0.6
pH
R2A_PIPES pH 4.5
-0.4
+0.0
-0.0
+0.3
+0.5
pH
R2A_PIPES pH 4.25
-0.2
+0.1
+0.0
+0.2
+0.4
pH
R2A_PIPES pH 4.25
-0.3
+0.1
+0.4
-0.1
+0.4
pH
R2A_PIPES pH 4.5
-0.1
+0.2
+0.1
+0.1
+0.4
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