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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter sp. FW510-T8
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Number of genes on each side:
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5
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
pepB and yigB are separated by 100 nucleotides
yigB and OKGIIK_00145 are separated by 13 nucleotides
OKGIIK_00145 and OKGIIK_00150 are separated by 303 nucleotides
OKGIIK_00150 and hop are separated by 400 nucleotides
OKGIIK_00135: pepB - leucyl aminopeptidase, at 32,943 to 34,322
pepB
OKGIIK_00140: yigB - HAD family hydrolase, at 34,423 to 35,121
yigB
OKGIIK_00145: OKGIIK_00145 - Peptidoglycan-binding protein, at 35,135 to 36,481
_00145
OKGIIK_00150: OKGIIK_00150 - Periplasmic serine endoprotease DegP-like, at 36,785 to 38,191
_00150
OKGIIK_00155: hop - ribonucleoside-diphosphate reductase, at 38,592 to 41,864
hop
Group
Condition
OKGIIK
_00135
OKGIIK
_00140
OKGIIK
_00145
OKGIIK
_00150
OKGIIK
_00155
pepB
yigB
hop
pH
R2A_PIPES pH 4
-0.3
-0.5
-0.7
+0.5
-0.1
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
+0.1
-0.4
-0.0
-0.2
-0.0
pH
R2A_PIPES pH 4.5
+0.1
-0.1
-0.2
-0.0
-0.3
stress
R2A_PIPES with Aluminum chloride 0.28125 mM
+0.1
-0.3
+0.2
-0.1
-0.3
pH
R2A_PIPES pH 4.5
+0.2
-0.1
-0.1
+0.0
-0.3
stress
R2A_PIPES with Cobalt chloride 1024 uM
+0.1
-0.2
-0.1
+0.1
-0.1
no stress control
no stress control
-0.1
+0.0
+0.1
+0.0
-0.2
no stress control
no stress control
+0.3
-0.4
+0.2
+0.0
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
-0.4
+0.1
-0.0
+0.2
pH
R2A_PIPES pH 4.25
+0.3
-0.2
-0.2
+0.1
+0.1
no stress control
no stress control
+0.2
-0.2
+0.0
+0.1
-0.1
stress
R2A_PIPES with Cobalt chloride 1024 uM
+0.1
+0.1
-0.1
+0.0
-0.1
stress
R2A_PIPES with Cadmium chloride 128 uM
+0.2
+0.2
-0.0
-0.1
-0.1
no stress control
no stress control
+0.0
-0.1
+0.2
+0.0
+0.0
no stress control
no stress control
+0.0
+0.0
+0.1
+0.1
-0.1
pH
R2A_PIPES pH 4
+0.5
+0.0
-0.8
+0.5
-0.1
no stress control
no stress control
+0.1
+0.0
+0.0
+0.1
+0.0
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
+0.2
-0.1
+0.1
+0.0
-0.0
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
+0.2
-0.1
+0.1
+0.0
+0.0
pH
R2A_PIPES pH 4.25
+0.3
+0.1
-0.0
+0.1
-0.1
stress
R2A_PIPES with Nickel (II) chloride 424 uM
+0.2
+0.2
-0.0
+0.0
+0.0
stress
R2A_PIPES with Aluminum chloride 0.28125 mM
+0.4
-0.2
+0.1
+0.1
-0.1
stress
R2A_PIPES with Cobalt chloride 512 uM
+0.1
+0.0
+0.1
+0.2
-0.0
no stress control
no stress control
+0.1
+0.1
+0.1
+0.3
-0.1
stress
R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
+0.2
-0.0
+0.1
+0.2
+0.0
stress
R2A_PIPES with Cobalt chloride 512 uM
+0.2
+0.0
+0.1
+0.1
+0.0
no stress control
no stress control
+0.1
+0.0
+0.1
+0.4
+0.0
no stress control
no stress control
+0.4
+0.0
+0.0
+0.2
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
-0.2
+0.2
+0.2
+0.5
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