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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli HS(pFamp)R (ATCC 700891)
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
OHPLBJKB_00988 and OHPLBJKB_00989 overlap by 20 nucleotides
OHPLBJKB_00989 and OHPLBJKB_00990 overlap by 7 nucleotides
OHPLBJKB_00990 and OHPLBJKB_00991 are separated by 139 nucleotides
OHPLBJKB_00991 and OHPLBJKB_00992 are separated by 62 nucleotides
OHPLBJKB_00988: OHPLBJKB_00988 - tRNA pseudouridine synthase D, at 1,022,178 to 1,023,227
_00988
OHPLBJKB_00989: OHPLBJKB_00989 - '5'/3'-nucleotidase SurE' transl_table=11, at 1,023,208 to 1,023,969
_00989
OHPLBJKB_00990: OHPLBJKB_00990 - Protein-L-isoaspartate O-methyltransferase, at 1,023,963 to 1,024,589
_00990
OHPLBJKB_00991: OHPLBJKB_00991 - Murein hydrolase activator NlpD, at 1,024,729 to 1,025,868
_00991
OHPLBJKB_00992: OHPLBJKB_00992 - RNA polymerase sigma factor RpoS, at 1,025,931 to 1,026,923
_00992
Group
Condition
OHPLBJKB
_00988
OHPLBJKB
_00989
OHPLBJKB
_00990
OHPLBJKB
_00991
OHPLBJKB
_00992
phage
vio MOI1
-0.1
-0.1
-0.1
-0.1
-0.3
phage
HSDP5
-0.2
-0.2
-0.0
+0.0
-0.3
phage
HSDP5
-0.2
-0.0
-0.1
+0.2
-0.5
phage
iri MOI10
-0.2
-0.2
-0.0
-0.0
-0.1
phage
bur MOI1
-0.1
+0.1
-0.1
-0.2
-0.2
phage
vio MOI1
+0.1
-0.3
-0.1
+0.1
-0.2
phage
vio MOI10
+0.1
-0.1
-0.2
+0.1
-0.2
phage
lib only
-0.0
+0.2
-0.0
-0.3
-0.0
phage
BWC1S MOI10
+0.3
+0.1
+0.1
-0.3
-0.4
phage
vio MOI10
+0.2
+0.0
-0.1
-0.2
-0.2
phage
bur MOI1
+0.2
+0.0
+0.2
-0.2
-0.5
phage
hib MOI1
+0.3
+0.3
+0.0
-0.3
-0.5
phage
K5
-0.1
-0.1
-0.2
+0.2
+0.2
phage
Z3 MOI1
+0.4
-0.5
+0.1
-0.1
+0.0
phage
lib only
-0.1
+0.1
+0.1
+0.1
-0.2
phage
Sew9
+0.0
-0.0
-0.1
+0.3
-0.1
phage
lib only
-0.1
+0.0
-0.2
+0.1
+0.2
phage
EBB2 MOI1
+0.1
+0.1
+0.1
+0.0
-0.3
phage
hib MOI10
+0.3
+0.0
+0.0
-0.2
-0.1
phage
hib MOI1
+0.4
-0.0
-0.0
-0.1
-0.1
phage
mer MOI1
+0.2
+0.1
+0.2
-0.1
-0.2
phage
bur MOI10
+0.2
+0.1
+0.1
-0.2
+0.0
phage
mer MOI10
+0.2
+0.2
+0.1
-0.0
-0.1
phage
BWC1S MOI1
+0.4
+0.0
+0.0
+0.0
-0.2
phage
bur MOI10
+0.3
+0.1
+0.2
-0.2
-0.1
phage
BWC1S MOI10
+0.4
+0.2
+0.0
-0.1
-0.0
phage
Z3 MOI1
+0.6
-0.1
+0.1
-0.2
+0.1
phage
BWC1S MOI1
+0.7
-0.0
+0.4
-0.1
-0.1
phage
T3 MOI10
+0.2
+0.3
+0.3
+0.3
+0.7
phage
T4 MOI10
+0.4
+0.3
+0.2
+0.3
+0.8
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