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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. S08-1
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
OH686_23445 and OH686_23450 are separated by 81 nucleotides
OH686_23450 and OH686_23455 overlap by 4 nucleotides
OH686_23455 and OH686_23460 are separated by 88 nucleotides
OH686_23460 and OH686_23465 are separated by 211 nucleotides
OH686_23445: OH686_23445 - protein of unknown function DUF1232, at 4,750,848 to 4,751,228
_23445
OH686_23450: OH686_23450 - Putative sulfatase, at 4,751,310 to 4,753,283
_23450
OH686_23455: OH686_23455 - Lipid A 4'-phosphatase LpxF-like, putative, at 4,753,280 to 4,753,999
_23455
OH686_23460: OH686_23460 - Poly(3-hydroxyalkanoate) depolymerase, at 4,754,088 to 4,754,849
_23460
OH686_23465: OH686_23465 - Transcriptional regulator, HxlR family, at 4,755,061 to 4,755,552
_23465
Group
Condition
OH686
_23445
OH686
_23450
OH686
_23455
OH686
_23460
OH686
_23465
carbon source
octanoate (C)
-0.0
-0.1
+0.0
-0.6
-1.4
carbon source
octanoate (C)
-0.2
+0.1
-0.2
+0.1
-1.6
carbon source
octanoate (C)
-0.7
+0.1
-0.6
-0.1
+0.1
carbon source
acetate (C)
-0.4
-0.0
-0.0
+0.1
-0.3
carbon source
octanoate (C)
-0.3
+0.0
-0.1
+0.0
-0.2
carbon source
acetate (C)
+0.0
+0.0
-0.1
-0.1
-0.3
carbon source
D,L-Malic Acid (C)
-0.2
-0.0
-0.1
+0.0
-0.0
carbon source
D-Glucose (C)
-0.1
-0.0
+0.0
-0.1
-0.1
carbon source
D-Glucose (C)
-0.3
+0.0
-0.2
+0.1
+0.1
carbon source
acetate (C)
+0.0
+0.0
-0.0
-0.0
-0.3
carbon source
D-Glucose (C)
-0.0
+0.0
-0.0
-0.0
-0.2
carbon source
acetate (C)
-0.2
+0.0
-0.0
-0.0
-0.0
carbon source
acetate (C)
-0.2
+0.0
-0.1
+0.1
+0.0
carbon source
octanoate (C)
-0.1
+0.0
-0.0
+0.0
-0.1
carbon source
D-Glucose (C)
+0.2
+0.0
-0.1
+0.0
-0.3
carbon source
D-Glucose (C)
+0.1
+0.0
-0.0
+0.0
-0.2
carbon source
Trisodium citrate (C)
-0.1
+0.0
-0.2
+0.0
+0.1
carbon source
acetate (C)
-0.0
+0.1
+0.1
-0.0
-0.1
carbon source
D-Glucose (C)
+0.1
-0.1
-0.2
+0.0
+0.2
carbon source
Sorgoleone (C)
-0.0
+0.1
-0.1
+0.0
+0.2
carbon source
D,L-Malic Acid (C)
-0.1
+0.1
-0.1
+0.0
+0.1
carbon source
D-Glucose (C)
+0.1
+0.0
-0.1
-0.0
+0.1
carbon source
D-Glucose (C)
-0.1
+0.0
-0.1
+0.0
+0.2
carbon source
octanoate (C)
+0.0
+0.1
+0.1
+0.0
-0.2
carbon source
Trisodium citrate (C)
+0.0
+0.1
-0.1
+0.1
+0.1
carbon source
Trisodium citrate (C)
+0.1
+0.1
+0.0
-0.1
+0.2
carbon source
Trisodium citrate (C)
+0.3
+0.0
-0.0
+0.1
-0.0
carbon source
Sorgoleone (C)
+0.0
+0.1
+0.0
-0.1
+0.2
carbon source
D-Glucose (C)
+0.1
+0.1
-0.0
+0.0
+0.2
carbon source
Trisodium citrate (C)
+0.3
+0.1
+0.0
-0.1
+0.3
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