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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. S08-1
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
OH686_20925 and OH686_20930 overlap by 4 nucleotides
OH686_20930 and OH686_20935 are separated by 16 nucleotides
OH686_20935 and OH686_20940 are separated by 256 nucleotides
OH686_20940 and OH686_20945 are separated by 3 nucleotides
OH686_20925: OH686_20925 - 3-hydroxyisobutyrate dehydrogenase family protein, at 4,278,696 to 4,279,655
_20925
OH686_20930: OH686_20930 - Hydroxypyruvate isomerase , at 4,279,652 to 4,280,428
_20930
OH686_20935: OH686_20935 - hypothetical protein, at 4,280,445 to 4,282,625
_20935
OH686_20940: OH686_20940 - GTPase , at 4,282,882 to 4,283,250
_20940
OH686_20945: OH686_20945 - Multidrug resistance efflux pump, at 4,283,254 to 4,284,213
_20945
Group
Condition
OH686
_20925
OH686
_20930
OH686
_20935
OH686
_20940
OH686
_20945
carbon source
octanoate (C)
-0.4
-0.9
-0.0
-0.3
-0.2
carbon source
octanoate (C)
-0.6
-0.4
-0.0
-0.1
-0.0
carbon source
Sorgoleone (C)
-0.3
-0.2
-0.1
-0.1
-0.0
carbon source
octanoate (C)
-0.3
-0.7
-0.1
+0.4
+0.1
carbon source
Sorgoleone (C)
-0.1
-0.2
+0.0
-0.2
+0.0
carbon source
Sorgoleone (C)
-0.2
-0.1
-0.1
-0.0
-0.0
carbon source
acetate (C)
-0.3
-0.4
+0.1
+0.3
+0.1
carbon source
Sorgoleone (C)
-0.1
-0.2
+0.0
+0.0
+0.1
carbon source
octanoate (C)
-0.2
-0.6
-0.1
+0.7
+0.1
carbon source
D-Glucose (C)
-0.1
-0.0
-0.0
+0.1
+0.1
carbon source
octanoate (C)
-0.1
-0.4
-0.1
+0.4
+0.2
carbon source
D-Glucose (C)
+0.1
+0.0
+0.0
+0.0
-0.1
carbon source
Trisodium citrate (C)
-0.0
-0.1
+0.0
+0.1
+0.1
carbon source
Trisodium citrate (C)
-0.1
-0.1
+0.1
+0.2
+0.1
carbon source
Trisodium citrate (C)
-0.1
+0.0
+0.0
+0.3
+0.0
carbon source
octanoate (C)
+0.3
-0.1
-0.3
+0.2
+0.1
carbon source
Trisodium citrate (C)
-0.1
+0.0
+0.0
+0.3
+0.0
carbon source
D,L-Malic Acid (C)
-0.1
+0.0
-0.0
+0.2
+0.1
carbon source
D,L-Malic Acid (C)
+0.0
-0.0
+0.1
+0.3
-0.1
carbon source
acetate (C)
-0.0
-0.0
+0.0
+0.3
+0.0
carbon source
Trisodium citrate (C)
-0.1
+0.1
+0.0
+0.1
+0.1
carbon source
Trisodium citrate (C)
-0.0
+0.1
+0.1
+0.3
-0.1
carbon source
acetate (C)
-0.0
+0.0
+0.0
+0.2
+0.1
carbon source
acetate (C)
-0.0
+0.0
-0.0
+0.4
-0.0
carbon source
acetate (C)
+0.0
-0.0
+0.1
+0.3
+0.0
carbon source
D-Glucose (C)
+0.0
+0.2
-0.0
+0.2
-0.0
carbon source
D-Glucose (C)
+0.0
-0.1
-0.0
+0.4
+0.1
carbon source
D-Glucose (C)
+0.0
-0.1
+0.1
+0.4
+0.1
carbon source
acetate (C)
+0.0
+0.0
+0.0
+0.5
+0.1
carbon source
acetate (C)
-0.0
+0.0
+0.0
+0.5
+0.1
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