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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. S08-1
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
OH686_19990 and OH686_19995 are separated by 148 nucleotides
OH686_19995 and OH686_20000 are separated by 29 nucleotides
OH686_20000 and OH686_20005 are separated by 192 nucleotides
OH686_20005 and OH686_20010 overlap by 8 nucleotides
OH686_19990: OH686_19990 - Tripartite tricarboxylate transporter TctB family, at 4,090,415 to 4,090,861
_19990
OH686_19995: OH686_19995 - Tripartite tricarboxylate transporter TctC family, at 4,091,010 to 4,091,984
_19995
OH686_20000: OH686_20000 - Tricarboxylate porin OpdH, at 4,092,014 to 4,093,282
_20000
OH686_20005: OH686_20005 - Tricarboxylate transport transcriptional regulator TctD, at 4,093,475 to 4,094,161
_20005
OH686_20010: OH686_20010 - Tricarboxylate transport sensor protein TctE, at 4,094,154 to 4,095,548
_20010
Group
Condition
OH686
_19990
OH686
_19995
OH686
_20000
OH686
_20005
OH686
_20010
carbon source
Trisodium citrate (C)
-2.2
-4.6
-1.3
-5.1
-5.6
carbon source
Trisodium citrate (C)
-2.4
-4.8
-1.1
-5.0
-5.0
carbon source
Trisodium citrate (C)
-2.1
-4.4
-1.1
-5.7
-4.8
carbon source
Trisodium citrate (C)
-2.1
-4.5
-1.1
-5.5
-4.8
carbon source
Trisodium citrate (C)
-1.7
-4.2
-1.2
-4.8
-5.3
carbon source
Trisodium citrate (C)
-1.6
-4.7
-0.7
-4.6
-4.9
carbon source
Trisodium citrate (C)
-1.7
-4.5
-0.8
-4.9
-4.3
carbon source
Trisodium citrate (C)
-1.9
-3.8
-0.7
-4.9
-4.2
carbon source
octanoate (C)
-0.6
+0.5
-0.1
+0.0
-0.2
carbon source
Sorgoleone (C)
-0.1
-0.1
-0.2
-0.1
+0.0
carbon source
octanoate (C)
+0.1
-0.1
-0.0
-0.3
+0.1
carbon source
octanoate (C)
-0.3
+0.3
-0.1
-0.2
+0.1
carbon source
Sorgoleone (C)
-0.2
+0.1
-0.1
-0.0
+0.1
carbon source
acetate (C)
+0.1
+0.1
-0.1
+0.0
-0.2
carbon source
D-Glucose (C)
-0.1
+0.3
-0.1
-0.1
+0.0
carbon source
D,L-Malic Acid (C)
-0.2
-0.1
+0.0
+0.2
+0.1
carbon source
D-Glucose (C)
+0.0
+0.2
-0.1
-0.1
+0.0
carbon source
acetate (C)
-0.2
+0.1
+0.0
+0.3
-0.0
carbon source
Sorgoleone (C)
+0.2
+0.1
-0.1
-0.1
+0.0
carbon source
D-Glucose (C)
-0.0
+0.3
-0.1
-0.1
+0.1
carbon source
acetate (C)
-0.1
+0.2
+0.0
+0.2
-0.0
carbon source
D-Glucose (C)
+0.2
+0.2
-0.1
-0.0
+0.1
carbon source
D,L-Malic Acid (C)
-0.0
+0.2
-0.1
+0.2
+0.2
carbon source
acetate (C)
+0.2
-0.1
+0.1
+0.1
+0.1
carbon source
acetate (C)
+0.1
+0.2
+0.0
+0.1
+0.1
carbon source
acetate (C)
-0.0
+0.2
+0.2
+0.2
+0.0
carbon source
acetate (C)
+0.3
+0.1
+0.1
+0.1
+0.0
carbon source
D-Glucose (C)
+0.4
+0.0
-0.0
+0.2
+0.1
carbon source
D-Glucose (C)
+0.1
+0.2
-0.0
+0.2
+0.2
carbon source
octanoate (C)
+0.8
-0.1
+0.0
-0.1
+0.5
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