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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. S08-1
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
OH686_19205 and OH686_19210 are separated by 10 nucleotides
OH686_19210 and OH686_19215 are separated by 167 nucleotides
OH686_19215 and OH686_19220 are separated by 17 nucleotides
OH686_19220 and OH686_19225 are separated by 93 nucleotides
OH686_19205: OH686_19205 - Thiol peroxidase, Bcp-type , at 3,961,064 to 3,961,537
_19205
OH686_19210: OH686_19210 - Glycine cleavage system transcriptional antiactivator GcvR, at 3,961,548 to 3,962,105
_19210
OH686_19215: OH686_19215 - 4-hydroxy-tetrahydrodipicolinate synthase, at 3,962,273 to 3,963,151
_19215
OH686_19220: OH686_19220 - Outer membrane beta-barrel assembly protein BamC, at 3,963,169 to 3,964,284
_19220
OH686_19225: OH686_19225 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 3,964,378 to 3,965,247
_19225
Group
Condition
OH686
_19205
OH686
_19210
OH686
_19215
OH686
_19220
OH686
_19225
carbon source
D-Glucose (C)
+0.0
+0.1
N.D.
-0.8
N.D.
carbon source
Sorgoleone (C)
+0.0
+0.0
N.D.
-0.7
N.D.
carbon source
Sorgoleone (C)
-0.0
-0.0
N.D.
-0.5
N.D.
carbon source
D-Glucose (C)
+0.1
+0.2
N.D.
-0.7
N.D.
carbon source
D-Glucose (C)
+0.2
+0.3
N.D.
-0.9
N.D.
carbon source
D-Glucose (C)
+0.2
+0.1
N.D.
-0.7
N.D.
carbon source
D-Glucose (C)
+0.1
+0.1
N.D.
-0.5
N.D.
carbon source
Trisodium citrate (C)
+0.0
+0.1
N.D.
-0.5
N.D.
carbon source
Trisodium citrate (C)
+0.0
+0.1
N.D.
-0.5
N.D.
carbon source
D-Glucose (C)
+0.1
+0.0
N.D.
-0.4
N.D.
carbon source
Sorgoleone (C)
+0.1
+0.0
N.D.
-0.4
N.D.
carbon source
D-Glucose (C)
+0.0
+0.1
N.D.
-0.4
N.D.
carbon source
Sorgoleone (C)
+0.0
+0.1
N.D.
-0.4
N.D.
carbon source
Trisodium citrate (C)
+0.1
+0.1
N.D.
-0.4
N.D.
carbon source
acetate (C)
+0.2
+0.0
N.D.
-0.3
N.D.
carbon source
Trisodium citrate (C)
+0.1
+0.1
N.D.
-0.3
N.D.
carbon source
Trisodium citrate (C)
+0.1
+0.2
N.D.
-0.3
N.D.
carbon source
Trisodium citrate (C)
+0.0
+0.2
N.D.
-0.3
N.D.
carbon source
D-Glucose (C)
+0.1
+0.1
N.D.
-0.3
N.D.
carbon source
acetate (C)
+0.2
-0.1
N.D.
-0.2
N.D.
carbon source
Trisodium citrate (C)
+0.2
+0.1
N.D.
-0.2
N.D.
carbon source
Trisodium citrate (C)
+0.2
+0.2
N.D.
-0.3
N.D.
carbon source
D-Glucose (C)
+0.2
+0.2
N.D.
-0.2
N.D.
carbon source
D,L-Malic Acid (C)
+0.2
+0.2
N.D.
-0.1
N.D.
carbon source
octanoate (C)
+0.2
+0.4
N.D.
+0.4
N.D.
carbon source
octanoate (C)
-0.1
+0.9
N.D.
+0.9
N.D.
carbon source
octanoate (C)
+0.1
+0.1
N.D.
+1.8
N.D.
carbon source
octanoate (C)
+0.1
+0.1
N.D.
+1.9
N.D.
carbon source
octanoate (C)
+0.2
+0.4
N.D.
+1.6
N.D.
carbon source
octanoate (C)
+0.3
+0.0
N.D.
+2.0
N.D.
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