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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. S08-1
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500 nt
OH686_18560 and OH686_18565 are separated by 13 nucleotides
OH686_18565 and OH686_18570 are separated by 129 nucleotides
OH686_18570 and OH686_18575 are separated by 60 nucleotides
OH686_18575 and OH686_18580 are separated by 113 nucleotides
OH686_18560: OH686_18560 - glutaredoxin 3, at 3,853,318 to 3,853,572
_18560
OH686_18565: OH686_18565 - Alkylhydroperoxidase AhpD domain protein, at 3,853,586 to 3,854,104
_18565
OH686_18570: OH686_18570 - Transcriptional regulator, AraC family, at 3,854,234 to 3,855,058
_18570
OH686_18575: OH686_18575 - Transcriptional regulator, LysR family, at 3,855,119 to 3,856,003
_18575
OH686_18580: OH686_18580 - Alcohol dehydrogenase, zinc-containing, at 3,856,117 to 3,857,106
_18580
Group
Condition
OH686
_18560
OH686
_18565
OH686
_18570
OH686
_18575
OH686
_18580
carbon source
octanoate (C)
-0.2
-0.5
-0.1
-0.1
+0.0
carbon source
Trisodium citrate (C)
-0.1
-0.2
-0.3
-0.0
-0.1
carbon source
octanoate (C)
-0.2
-0.2
+0.0
-0.3
-0.0
carbon source
D-Glucose (C)
-0.1
-0.1
-0.2
-0.2
-0.1
carbon source
octanoate (C)
+0.1
-0.2
-0.3
-0.3
+0.0
carbon source
D-Glucose (C)
-0.1
-0.1
-0.1
-0.1
-0.0
carbon source
acetate (C)
-0.1
-0.2
+0.0
-0.3
+0.1
carbon source
Trisodium citrate (C)
-0.1
-0.0
-0.2
-0.1
+0.0
carbon source
D-Glucose (C)
-0.2
-0.2
+0.2
-0.1
-0.0
carbon source
D-Glucose (C)
-0.2
+0.1
-0.0
-0.1
-0.1
carbon source
D-Glucose (C)
-0.3
+0.0
+0.1
-0.1
+0.1
carbon source
octanoate (C)
-0.2
-0.1
-0.1
-0.1
+0.2
carbon source
D,L-Malic Acid (C)
+0.1
-0.2
+0.0
-0.2
+0.0
carbon source
D,L-Malic Acid (C)
+0.2
-0.2
+0.0
-0.3
-0.0
carbon source
Sorgoleone (C)
+0.1
-0.2
+0.0
-0.1
-0.1
carbon source
Trisodium citrate (C)
+0.1
+0.0
-0.3
-0.0
+0.0
carbon source
Trisodium citrate (C)
-0.0
-0.1
+0.1
-0.2
-0.0
carbon source
acetate (C)
+0.1
-0.1
+0.1
-0.2
-0.0
carbon source
D,L-Malic Acid (C)
+0.1
-0.0
-0.1
-0.2
+0.1
carbon source
acetate (C)
-0.0
-0.2
+0.1
+0.1
-0.0
carbon source
octanoate (C)
+0.2
-0.0
+0.1
-0.2
-0.2
carbon source
D-Glucose (C)
-0.2
-0.0
+0.1
+0.1
+0.1
carbon source
acetate (C)
+0.1
+0.0
+0.1
-0.2
+0.0
carbon source
Trisodium citrate (C)
+0.1
-0.0
+0.2
-0.1
-0.1
carbon source
Trisodium citrate (C)
+0.1
-0.0
+0.1
-0.1
-0.0
carbon source
Trisodium citrate (C)
+0.1
-0.2
+0.2
-0.1
+0.1
carbon source
Trisodium citrate (C)
-0.2
+0.1
+0.3
-0.1
+0.0
carbon source
octanoate (C)
-0.1
+0.1
+0.1
+0.1
+0.0
carbon source
D-Glucose (C)
+0.1
+0.1
+0.2
-0.2
+0.1
carbon source
acetate (C)
+0.2
+0.0
+0.1
-0.1
+0.1
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