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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. S08-1
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
OH686_16680 and OH686_16685 overlap by 4 nucleotides
OH686_16685 and OH686_16690 are separated by 152 nucleotides
OH686_16690 and OH686_16695 are separated by 142 nucleotides
OH686_16695 and OH686_16700 are separated by 9 nucleotides
OH686_16680: OH686_16680 - CDS, at 3,487,232 to 3,487,351
_16680
OH686_16685: OH686_16685 - Urease accessory protein UreE, at 3,487,348 to 3,487,848
_16685
OH686_16690: OH686_16690 - Transcriptional regulator, AcrR family, at 3,488,001 to 3,488,636
_16690
OH686_16695: OH686_16695 - Flavodoxin (ferredoxin-NADPH reductases) family 1, at 3,488,779 to 3,489,867
_16695
OH686_16700: OH686_16700 - Linoleoyl-CoA desaturase , at 3,489,877 to 3,490,956
_16700
Group
Condition
OH686
_16680
OH686
_16685
OH686
_16690
OH686
_16695
OH686
_16700
carbon source
octanoate (C)
N.D.
-0.6
-0.2
+0.2
+0.0
carbon source
D-Glucose (C)
N.D.
+0.4
-0.8
-0.1
-0.0
carbon source
Sorgoleone (C)
N.D.
+0.1
-0.5
-0.2
-0.1
carbon source
octanoate (C)
N.D.
-0.0
+0.1
-0.3
-0.3
carbon source
D-Glucose (C)
N.D.
+0.1
-0.5
-0.1
-0.0
carbon source
acetate (C)
N.D.
+0.0
-0.3
-0.0
-0.0
carbon source
octanoate (C)
N.D.
+0.2
-0.2
+0.3
-0.6
carbon source
Sorgoleone (C)
N.D.
+0.1
-0.3
-0.1
+0.0
carbon source
D-Glucose (C)
N.D.
+0.0
-0.2
-0.1
-0.0
carbon source
Trisodium citrate (C)
N.D.
+0.1
-0.2
-0.0
-0.0
carbon source
acetate (C)
N.D.
+0.3
-0.4
+0.0
-0.2
carbon source
D-Glucose (C)
N.D.
+0.3
-0.4
-0.1
+0.0
carbon source
Trisodium citrate (C)
N.D.
+0.1
-0.1
-0.1
-0.0
carbon source
octanoate (C)
N.D.
+0.4
+0.2
-0.4
-0.3
carbon source
D-Glucose (C)
N.D.
+0.1
-0.2
-0.1
+0.1
carbon source
acetate (C)
N.D.
+0.3
-0.3
-0.0
-0.2
carbon source
Sorgoleone (C)
N.D.
+0.2
-0.2
-0.1
-0.0
carbon source
D-Glucose (C)
N.D.
+0.3
-0.2
-0.1
-0.1
carbon source
D-Glucose (C)
N.D.
+0.5
-0.5
+0.0
-0.1
carbon source
D-Glucose (C)
N.D.
+0.2
-0.1
-0.0
-0.2
carbon source
Sorgoleone (C)
N.D.
+0.2
-0.3
+0.1
-0.0
carbon source
D-Glucose (C)
N.D.
+0.2
-0.2
+0.0
-0.0
carbon source
D,L-Malic Acid (C)
N.D.
+0.3
-0.2
-0.0
-0.0
carbon source
Trisodium citrate (C)
N.D.
+0.2
+0.1
-0.0
-0.1
carbon source
acetate (C)
N.D.
+0.3
-0.1
-0.1
+0.0
carbon source
Trisodium citrate (C)
N.D.
+0.4
-0.1
-0.0
-0.1
carbon source
Trisodium citrate (C)
N.D.
+0.3
+0.0
+0.0
-0.1
carbon source
D-Glucose (C)
N.D.
+0.2
+0.2
+0.0
-0.1
carbon source
octanoate (C)
N.D.
+0.3
+0.2
+0.1
-0.2
carbon source
acetate (C)
N.D.
+0.3
+0.4
+0.1
+0.0
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