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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. S08-1
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
OH686_14605 and OH686_14610 overlap by 4 nucleotides
OH686_14610 and OH686_14615 are separated by 13 nucleotides
OH686_14615 and OH686_14620 are separated by 2 nucleotides
OH686_14620 and OH686_14625 are separated by 3 nucleotides
OH686_14605: OH686_14605 - Tetratricopeptide repeat-containing protein, at 3,069,288 to 3,071,120
_14605
OH686_14610: OH686_14610 - hypothetical protein, at 3,071,117 to 3,071,950
_14610
OH686_14615: OH686_14615 - Type I secretion outer membrane protein, TolC family, at 3,071,964 to 3,073,286
_14615
OH686_14620: OH686_14620 - Type I secretion membrane fusion protein, HlyD family, at 3,073,289 to 3,074,617
_14620
OH686_14625: OH686_14625 - Type I secretion system ATPase, at 3,074,621 to 3,076,342
_14625
Group
Condition
OH686
_14605
OH686
_14610
OH686
_14615
OH686
_14620
OH686
_14625
carbon source
octanoate (C)
-0.1
+0.2
-0.3
-0.4
-0.1
carbon source
D-Glucose (C)
-0.1
-0.2
+0.1
-0.0
+0.0
carbon source
octanoate (C)
+0.0
-0.1
+0.2
-0.1
-0.0
carbon source
Sorgoleone (C)
+0.1
-0.0
+0.1
-0.1
-0.1
carbon source
D-Glucose (C)
-0.1
-0.1
+0.1
+0.1
-0.0
carbon source
acetate (C)
+0.1
+0.0
+0.1
+0.1
-0.2
carbon source
D-Glucose (C)
+0.1
-0.0
+0.0
-0.1
+0.1
carbon source
D-Glucose (C)
+0.0
-0.1
+0.1
+0.1
-0.0
carbon source
D,L-Malic Acid (C)
+0.1
+0.1
+0.1
-0.0
-0.1
carbon source
D-Glucose (C)
-0.1
-0.1
+0.1
+0.1
+0.1
carbon source
acetate (C)
+0.1
-0.1
+0.0
+0.0
+0.1
carbon source
D-Glucose (C)
-0.0
-0.1
+0.2
+0.0
+0.1
carbon source
acetate (C)
-0.1
+0.0
+0.1
+0.1
-0.0
carbon source
D-Glucose (C)
+0.1
-0.1
+0.2
+0.0
+0.0
carbon source
D-Glucose (C)
+0.1
+0.0
+0.2
+0.0
-0.1
carbon source
Trisodium citrate (C)
-0.1
+0.1
+0.2
+0.0
+0.1
carbon source
D-Glucose (C)
+0.1
+0.0
+0.1
+0.1
-0.0
carbon source
Trisodium citrate (C)
+0.1
+0.2
+0.2
+0.0
-0.1
carbon source
acetate (C)
-0.0
-0.0
+0.2
+0.1
+0.1
carbon source
Trisodium citrate (C)
+0.0
+0.1
+0.2
-0.0
+0.1
carbon source
Trisodium citrate (C)
+0.1
+0.1
+0.1
+0.1
-0.0
carbon source
D,L-Malic Acid (C)
+0.1
+0.1
+0.1
+0.0
+0.1
carbon source
acetate (C)
+0.0
+0.1
+0.2
+0.1
-0.0
carbon source
Trisodium citrate (C)
+0.1
-0.0
+0.2
+0.2
+0.0
carbon source
Sorgoleone (C)
+0.2
+0.1
+0.1
+0.1
+0.0
carbon source
octanoate (C)
+0.1
-0.1
-0.0
+0.1
+0.4
carbon source
Trisodium citrate (C)
+0.1
+0.1
+0.2
+0.1
+0.1
carbon source
octanoate (C)
+0.2
+0.1
-0.0
+0.2
+0.2
carbon source
octanoate (C)
+0.2
+0.1
+0.0
+0.2
+0.1
carbon source
octanoate (C)
+0.2
+0.0
+0.1
+0.0
+0.3
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