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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. S08-1
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500 nt
OH686_14480 and OH686_14485 are separated by 3 nucleotides
OH686_14485 and OH686_14490 are separated by 71 nucleotides
OH686_14490 and OH686_14495 overlap by 1 nucleotides
OH686_14495 and OH686_14500 are separated by 55 nucleotides
OH686_14480: OH686_14480 - CDS, at 3,028,565 to 3,028,690
_14480
OH686_14485: OH686_14485 - SAM-dependent methyltransferase, at 3,028,694 to 3,029,899
_14485
OH686_14490: OH686_14490 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 3,029,971 to 3,030,660
_14490
OH686_14495: OH686_14495 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 3,030,660 to 3,031,352
_14495
OH686_14500: OH686_14500 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 3,031,408 to 3,032,160
_14500
Group
Condition
OH686
_14480
OH686
_14485
OH686
_14490
OH686
_14495
OH686
_14500
carbon source
octanoate (C)
N.D.
-0.1
-0.4
-0.3
-0.2
carbon source
octanoate (C)
N.D.
-0.2
-0.2
-0.3
-0.2
carbon source
octanoate (C)
N.D.
-0.3
-0.3
-0.2
-0.0
carbon source
octanoate (C)
N.D.
+0.0
-0.2
-0.4
-0.0
carbon source
octanoate (C)
N.D.
-0.2
-0.2
-0.2
+0.2
carbon source
octanoate (C)
N.D.
-0.1
-0.1
+0.1
-0.1
carbon source
acetate (C)
N.D.
-0.0
-0.1
-0.1
+0.1
carbon source
acetate (C)
N.D.
+0.1
-0.1
-0.1
-0.1
carbon source
acetate (C)
N.D.
+0.1
-0.0
-0.0
-0.1
carbon source
acetate (C)
N.D.
+0.0
-0.1
-0.1
+0.1
carbon source
acetate (C)
N.D.
+0.1
-0.0
-0.1
+0.1
carbon source
D-Glucose (C)
N.D.
-0.0
+0.2
-0.0
+0.0
carbon source
D,L-Malic Acid (C)
N.D.
-0.0
+0.0
-0.1
+0.2
carbon source
Trisodium citrate (C)
N.D.
-0.1
-0.0
-0.0
+0.2
carbon source
Sorgoleone (C)
N.D.
+0.1
-0.0
-0.1
+0.1
carbon source
D-Glucose (C)
N.D.
-0.0
+0.1
-0.1
+0.1
carbon source
Trisodium citrate (C)
N.D.
-0.1
+0.1
-0.1
+0.2
carbon source
Trisodium citrate (C)
N.D.
+0.0
-0.0
-0.0
+0.2
carbon source
D-Glucose (C)
N.D.
-0.1
+0.0
-0.0
+0.2
carbon source
D-Glucose (C)
N.D.
-0.1
+0.1
+0.1
+0.1
carbon source
D-Glucose (C)
N.D.
-0.0
+0.1
-0.0
+0.1
carbon source
D-Glucose (C)
N.D.
-0.0
+0.1
+0.0
+0.1
carbon source
D-Glucose (C)
N.D.
-0.0
+0.1
-0.0
+0.2
carbon source
Trisodium citrate (C)
N.D.
+0.1
+0.1
-0.0
+0.2
carbon source
Trisodium citrate (C)
N.D.
+0.0
+0.1
+0.1
+0.1
carbon source
D-Glucose (C)
N.D.
-0.0
+0.2
+0.2
+0.2
carbon source
D-Glucose (C)
N.D.
-0.1
+0.5
+0.5
+0.5
carbon source
D-Glucose (C)
N.D.
-0.0
+0.5
+0.4
+0.6
carbon source
D-Glucose (C)
N.D.
+0.1
+0.6
+0.4
+0.5
carbon source
D-Glucose (C)
N.D.
-0.0
+0.6
+0.5
+0.6
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