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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. S08-1
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
OH686_14350 and OH686_14355 overlap by 4 nucleotides
OH686_14355 and OH686_14360 overlap by 4 nucleotides
OH686_14360 and OH686_14365 are separated by 45 nucleotides
OH686_14365 and OH686_14370 overlap by 4 nucleotides
OH686_14350: OH686_14350 - hypothetical protein, at 2,995,757 to 2,996,134
_14350
OH686_14355: OH686_14355 - C4-dicarboxylate transport transcriptional regulatory protein, at 2,996,131 to 2,997,492
_14355
OH686_14360: OH686_14360 - Signal transduction histidine kinase regulating C4-dicarboxylate transport system, at 2,997,489 to 2,999,297
_14360
OH686_14365: OH686_14365 - dTDP-4-dehydrorhamnose reductase, at 2,999,343 to 3,000,209
_14365
OH686_14370: OH686_14370 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 3,000,206 to 3,000,751
_14370
Group
Condition
OH686
_14350
OH686
_14355
OH686
_14360
OH686
_14365
OH686
_14370
carbon source
D,L-Malic Acid (C)
-0.1
-2.0
-1.6
N.D.
N.D.
carbon source
D,L-Malic Acid (C)
+0.0
-2.2
-1.5
N.D.
N.D.
carbon source
D,L-Malic Acid (C)
+0.1
-2.1
-1.7
N.D.
N.D.
carbon source
octanoate (C)
-0.3
-1.2
+0.8
N.D.
N.D.
carbon source
Trisodium citrate (C)
-0.0
-0.4
-0.2
N.D.
N.D.
carbon source
octanoate (C)
-0.3
-0.3
+0.1
N.D.
N.D.
carbon source
Trisodium citrate (C)
+0.0
-0.3
-0.1
N.D.
N.D.
carbon source
Trisodium citrate (C)
+0.1
-0.1
-0.2
N.D.
N.D.
carbon source
Trisodium citrate (C)
-0.0
-0.2
-0.0
N.D.
N.D.
carbon source
Trisodium citrate (C)
-0.0
-0.1
-0.1
N.D.
N.D.
carbon source
Trisodium citrate (C)
+0.0
-0.2
-0.1
N.D.
N.D.
carbon source
acetate (C)
-0.2
-0.1
+0.1
N.D.
N.D.
carbon source
Trisodium citrate (C)
-0.0
-0.2
+0.1
N.D.
N.D.
carbon source
octanoate (C)
+0.0
-0.3
+0.3
N.D.
N.D.
carbon source
acetate (C)
-0.1
-0.1
+0.1
N.D.
N.D.
carbon source
D-Glucose (C)
-0.1
-0.0
+0.1
N.D.
N.D.
carbon source
acetate (C)
+0.1
-0.2
+0.0
N.D.
N.D.
carbon source
acetate (C)
+0.2
-0.1
+0.0
N.D.
N.D.
carbon source
D-Glucose (C)
+0.1
+0.0
-0.1
N.D.
N.D.
carbon source
acetate (C)
+0.1
-0.1
+0.1
N.D.
N.D.
carbon source
D-Glucose (C)
+0.0
-0.1
+0.1
N.D.
N.D.
carbon source
Trisodium citrate (C)
+0.2
-0.0
-0.1
N.D.
N.D.
carbon source
D-Glucose (C)
+0.1
+0.1
+0.0
N.D.
N.D.
carbon source
D-Glucose (C)
-0.0
+0.2
+0.1
N.D.
N.D.
carbon source
Sorgoleone (C)
+0.2
-0.0
+0.1
N.D.
N.D.
carbon source
Sorgoleone (C)
+0.2
-0.0
+0.1
N.D.
N.D.
carbon source
octanoate (C)
+0.2
-0.2
+0.2
N.D.
N.D.
carbon source
D-Glucose (C)
+0.2
+0.1
+0.1
N.D.
N.D.
carbon source
octanoate (C)
+0.4
-0.1
+0.1
N.D.
N.D.
carbon source
octanoate (C)
+0.2
-0.1
+0.4
N.D.
N.D.
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