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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. S08-1
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500 nt
OH686_12775 and OH686_12780 overlap by 1 nucleotides
OH686_12780 and OH686_12785 are separated by 6 nucleotides
OH686_12785 and OH686_12790 are separated by 2 nucleotides
OH686_12790 and OH686_12795 are separated by 3 nucleotides
OH686_12775: OH686_12775 - Protein serine/threonine phosphatase PrpC, regulation of stationary phase, at 2,685,554 to 2,686,285
_12775
OH686_12780: OH686_12780 - T6SS component TssM (IcmF/VasK), at 2,686,285 to 2,689,806
_12780
OH686_12785: OH686_12785 - T6SS outer membrane component TssL (ImpK/VasF), at 2,689,813 to 2,690,679
_12785
OH686_12790: OH686_12790 - T6SS component TssK (ImpJ/VasE), at 2,690,682 to 2,692,013
_12790
OH686_12795: OH686_12795 - T6SS secretion lipoprotein TssJ (VasD), at 2,692,017 to 2,692,496
_12795
Group
Condition
OH686
_12775
OH686
_12780
OH686
_12785
OH686
_12790
OH686
_12795
carbon source
D-Glucose (C)
-0.3
+0.0
-0.1
-0.1
-0.2
carbon source
D-Glucose (C)
-0.2
-0.1
+0.0
-0.3
-0.0
carbon source
octanoate (C)
-1.1
-0.1
+0.1
-0.0
+0.6
carbon source
Trisodium citrate (C)
-0.2
+0.0
+0.0
-0.0
-0.3
carbon source
octanoate (C)
-1.0
-0.1
+0.3
+0.0
+0.3
carbon source
D-Glucose (C)
-0.1
+0.0
+0.1
-0.2
-0.2
carbon source
D,L-Malic Acid (C)
+0.1
-0.0
-0.0
-0.0
-0.4
carbon source
D-Glucose (C)
-0.1
+0.0
+0.1
-0.1
-0.1
carbon source
octanoate (C)
-0.1
-0.2
-0.2
+0.1
+0.2
carbon source
octanoate (C)
+0.1
-0.0
-0.2
-0.1
+0.1
carbon source
D,L-Malic Acid (C)
+0.1
+0.0
-0.0
-0.2
-0.1
carbon source
acetate (C)
+0.3
-0.0
-0.1
-0.1
-0.1
carbon source
octanoate (C)
+0.1
-0.0
-0.0
+0.2
-0.2
carbon source
Sorgoleone (C)
+0.2
+0.0
-0.1
+0.0
-0.2
carbon source
Trisodium citrate (C)
-0.2
-0.0
+0.2
-0.1
+0.2
carbon source
D-Glucose (C)
+0.1
-0.0
-0.0
-0.2
+0.2
carbon source
D-Glucose (C)
+0.3
+0.0
-0.0
+0.0
-0.2
carbon source
Trisodium citrate (C)
+0.2
-0.1
+0.0
-0.1
+0.0
carbon source
Trisodium citrate (C)
+0.3
-0.1
+0.0
-0.1
+0.1
carbon source
Sorgoleone (C)
+0.1
-0.0
+0.2
-0.2
+0.1
carbon source
acetate (C)
+0.0
-0.0
+0.1
-0.1
+0.3
carbon source
acetate (C)
+0.2
-0.1
+0.1
-0.0
+0.1
carbon source
Trisodium citrate (C)
+0.1
+0.0
+0.2
-0.1
+0.1
carbon source
D-Glucose (C)
+0.5
+0.0
+0.1
-0.2
-0.2
carbon source
D-Glucose (C)
+0.3
+0.1
-0.1
+0.0
+0.0
carbon source
Trisodium citrate (C)
+0.2
-0.1
+0.0
+0.1
+0.2
carbon source
octanoate (C)
+0.4
-0.0
-0.0
-0.1
+0.1
carbon source
D-Glucose (C)
+0.6
-0.0
+0.1
-0.2
+0.1
carbon source
acetate (C)
+0.6
+0.0
+0.1
+0.1
+0.3
carbon source
acetate (C)
+0.5
+0.0
+0.1
+0.1
+0.4
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