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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. S08-1
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500 nt
OH686_11330 and OH686_11335 are separated by 77 nucleotides
OH686_11335 and OH686_11340 are separated by 147 nucleotides
OH686_11340 and OH686_11345 are separated by 38 nucleotides
OH686_11345 and OH686_11350 are separated by 65 nucleotides
OH686_11330: OH686_11330 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family, at 2,334,343 to 2,335,515
_11330
OH686_11335: OH686_11335 - Transcriptional regulator, AraC family, at 2,335,593 to 2,336,576
_11335
OH686_11340: OH686_11340 - Outer membrane protein, at 2,336,724 to 2,337,647
_11340
OH686_11345: OH686_11345 - UPF0339 protein YegP.N / UPF0339 protein YegP.C, at 2,337,686 to 2,338,018
_11345
OH686_11350: OH686_11350 - Transcriptional regulator GbuR, at 2,338,084 to 2,338,977
_11350
Group
Condition
OH686
_11330
OH686
_11335
OH686
_11340
OH686
_11345
OH686
_11350
carbon source
octanoate (C)
-0.1
+0.0
-0.1
+0.1
-0.1
carbon source
D-Glucose (C)
+0.0
+0.2
-0.3
-0.1
-0.0
carbon source
Trisodium citrate (C)
+0.0
-0.2
-0.1
-0.1
+0.1
carbon source
D-Glucose (C)
-0.1
+0.0
-0.2
+0.0
-0.0
carbon source
D-Glucose (C)
+0.0
+0.1
-0.1
-0.2
-0.1
carbon source
D-Glucose (C)
+0.0
+0.1
-0.1
-0.2
+0.1
carbon source
D-Glucose (C)
-0.1
+0.2
-0.1
-0.1
+0.0
carbon source
octanoate (C)
+0.0
+0.1
+0.1
-0.2
-0.2
carbon source
Sorgoleone (C)
+0.1
+0.0
-0.1
-0.2
+0.1
carbon source
octanoate (C)
+0.3
-0.2
-0.1
-0.2
+0.3
carbon source
D-Glucose (C)
-0.1
+0.0
-0.1
+0.1
+0.1
carbon source
Trisodium citrate (C)
-0.1
+0.1
-0.0
+0.1
+0.1
carbon source
D-Glucose (C)
-0.1
+0.1
-0.1
+0.1
+0.0
carbon source
Sorgoleone (C)
-0.1
+0.1
-0.1
+0.1
+0.0
carbon source
Trisodium citrate (C)
+0.0
+0.1
+0.0
-0.2
+0.0
carbon source
D-Glucose (C)
+0.3
+0.1
-0.2
+0.0
-0.0
carbon source
Trisodium citrate (C)
+0.2
+0.1
-0.0
-0.1
+0.1
carbon source
D-Glucose (C)
+0.0
+0.1
-0.1
+0.0
+0.1
carbon source
acetate (C)
+0.1
+0.0
-0.2
+0.2
+0.1
carbon source
acetate (C)
-0.2
+0.1
+0.1
+0.2
+0.0
carbon source
octanoate (C)
-0.0
+0.2
+0.1
-0.1
+0.1
carbon source
octanoate (C)
+0.1
+0.3
-0.1
-0.3
+0.3
carbon source
D-Glucose (C)
+0.0
+0.2
+0.0
+0.1
+0.0
carbon source
Sorgoleone (C)
+0.1
+0.1
+0.0
+0.2
-0.1
carbon source
acetate (C)
-0.1
+0.1
+0.2
+0.1
+0.2
carbon source
Trisodium citrate (C)
+0.0
+0.1
+0.1
+0.1
+0.2
carbon source
acetate (C)
-0.0
+0.1
+0.1
+0.3
+0.1
carbon source
acetate (C)
+0.1
+0.1
+0.2
+0.3
+0.0
carbon source
octanoate (C)
-0.0
+0.2
+0.3
+0.2
-0.1
carbon source
acetate (C)
+0.1
+0.1
+0.2
+0.4
+0.1
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