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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. S08-1
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
OH686_11010 and OH686_11015 overlap by 4 nucleotides
OH686_11015 and OH686_11020 overlap by 4 nucleotides
OH686_11020 and OH686_11025 are separated by 118 nucleotides
OH686_11025 and OH686_11030 are separated by 170 nucleotides
OH686_11010: OH686_11010 - hypothetical protein, at 2,268,950 to 2,269,369
_11010
OH686_11015: OH686_11015 - non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family, at 2,269,366 to 2,269,965
_11015
OH686_11020: OH686_11020 - Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW, at 2,269,962 to 2,271,122
_11020
OH686_11025: OH686_11025 - hypothetical protein, at 2,271,241 to 2,271,537
_11025
OH686_11030: OH686_11030 - Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific, at 2,271,708 to 2,272,031
_11030
Group
Condition
OH686
_11010
OH686
_11015
OH686
_11020
OH686
_11025
OH686
_11030
carbon source
D-Glucose (C)
-0.2
-0.3
+0.1
+0.0
-0.1
carbon source
Trisodium citrate (C)
-0.0
-0.3
-0.0
+0.0
-0.2
carbon source
acetate (C)
-0.1
-0.0
-0.2
+0.1
-0.2
carbon source
D-Glucose (C)
-0.0
-0.2
+0.0
-0.0
-0.1
carbon source
D-Glucose (C)
+0.1
-0.5
+0.0
-0.1
-0.0
carbon source
D,L-Malic Acid (C)
+0.1
-0.2
-0.1
-0.1
-0.1
carbon source
acetate (C)
-0.0
-0.3
-0.0
+0.1
-0.1
carbon source
octanoate (C)
+0.3
-0.1
+0.0
-0.5
-0.0
carbon source
acetate (C)
-0.0
-0.3
+0.0
-0.0
+0.1
carbon source
D-Glucose (C)
+0.1
-0.3
+0.1
+0.1
-0.1
carbon source
acetate (C)
+0.1
-0.3
+0.1
+0.1
-0.1
carbon source
acetate (C)
-0.1
-0.0
+0.1
-0.1
-0.1
carbon source
D-Glucose (C)
-0.1
-0.2
+0.2
-0.1
+0.0
carbon source
Sorgoleone (C)
-0.1
-0.2
-0.1
+0.1
+0.1
carbon source
octanoate (C)
-0.1
-0.3
+0.2
-0.1
+0.1
carbon source
Sorgoleone (C)
-0.0
-0.0
-0.1
+0.2
-0.2
carbon source
octanoate (C)
+0.0
-0.1
+0.2
-0.1
-0.0
carbon source
Sorgoleone (C)
+0.1
-0.2
+0.1
-0.0
+0.0
carbon source
Trisodium citrate (C)
+0.0
+0.1
+0.1
-0.0
-0.1
carbon source
D-Glucose (C)
-0.1
+0.1
-0.0
-0.1
+0.2
carbon source
D-Glucose (C)
-0.0
-0.0
+0.1
+0.2
-0.1
carbon source
Sorgoleone (C)
+0.0
-0.1
-0.0
+0.1
+0.1
carbon source
D-Glucose (C)
+0.0
-0.2
+0.1
+0.1
+0.1
carbon source
D-Glucose (C)
-0.0
-0.1
+0.1
+0.1
+0.1
carbon source
octanoate (C)
-0.1
-0.1
+0.2
+0.3
+0.1
carbon source
Trisodium citrate (C)
-0.0
+0.2
-0.1
+0.1
+0.1
carbon source
octanoate (C)
-0.2
+0.1
+0.3
+0.3
-0.0
carbon source
acetate (C)
+0.1
+0.0
+0.1
+0.1
+0.1
carbon source
D-Glucose (C)
-0.1
+0.1
+0.2
+0.1
+0.3
carbon source
octanoate (C)
-0.3
+0.8
+0.6
+0.4
+0.5
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