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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. S08-1
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
OH686_08740 and OH686_08745 overlap by 4 nucleotides
OH686_08745 and OH686_08750 overlap by 4 nucleotides
OH686_08750 and OH686_08755 are separated by 115 nucleotides
OH686_08755 and OH686_08760 are separated by 42 nucleotides
OH686_08740: OH686_08740 - Allophanate hydrolase 2 subunit 2 , at 1,781,032 to 1,781,952
_08740
OH686_08745: OH686_08745 - Allophanate hydrolase 2 subunit 1 , at 1,781,949 to 1,782,623
_08745
OH686_08750: OH686_08750 - Lactam utilization protein LamB, at 1,782,620 to 1,783,363
_08750
OH686_08755: OH686_08755 - Pyridoxal 5-phosphate (PLP)-dependent ornithine decarboxylase , at 1,783,479 to 1,784,642
_08755
OH686_08760: OH686_08760 - CDS, at 1,784,685 to 1,784,810
_08760
Group
Condition
OH686
_08740
OH686
_08745
OH686
_08750
OH686
_08755
OH686
_08760
carbon source
octanoate (C)
+0.3
-0.4
-0.6
-0.2
-0.2
carbon source
D-Glucose (C)
-0.3
-0.2
-0.3
-0.0
+0.1
carbon source
octanoate (C)
+0.1
-0.3
+0.0
-0.2
-0.3
carbon source
D,L-Malic Acid (C)
-0.2
-0.1
-0.2
-0.1
-0.1
carbon source
D-Glucose (C)
-0.2
-0.1
-0.1
-0.2
+0.0
carbon source
Sorgoleone (C)
-0.1
-0.2
-0.2
-0.1
+0.1
carbon source
D-Glucose (C)
-0.0
-0.3
-0.1
-0.0
-0.1
carbon source
octanoate (C)
-0.2
-0.2
+0.0
-0.3
+0.1
carbon source
Sorgoleone (C)
+0.0
-0.1
-0.1
-0.2
-0.1
carbon source
D-Glucose (C)
+0.1
+0.1
-0.2
-0.2
-0.3
carbon source
Trisodium citrate (C)
-0.0
-0.2
-0.2
-0.1
+0.0
carbon source
Trisodium citrate (C)
-0.2
-0.1
-0.1
-0.0
-0.0
carbon source
Sorgoleone (C)
+0.0
-0.1
-0.2
-0.0
-0.1
carbon source
D,L-Malic Acid (C)
+0.2
-0.1
-0.3
-0.0
-0.2
carbon source
octanoate (C)
-0.0
-0.1
+0.1
-0.3
-0.1
carbon source
octanoate (C)
+0.1
+0.3
-0.3
-0.4
-0.1
carbon source
Trisodium citrate (C)
+0.1
-0.2
-0.1
-0.1
-0.1
carbon source
acetate (C)
+0.2
-0.1
-0.2
-0.1
-0.1
carbon source
Trisodium citrate (C)
-0.2
+0.1
-0.0
-0.1
-0.0
carbon source
D-Glucose (C)
-0.2
-0.0
-0.1
-0.1
+0.1
carbon source
D-Glucose (C)
+0.1
+0.0
-0.2
-0.1
-0.1
carbon source
D-Glucose (C)
+0.1
-0.0
-0.2
-0.0
-0.1
carbon source
D,L-Malic Acid (C)
-0.1
+0.1
-0.1
-0.1
+0.0
carbon source
D-Glucose (C)
-0.1
+0.1
+0.1
-0.1
-0.1
carbon source
Trisodium citrate (C)
+0.1
-0.0
+0.1
-0.2
-0.1
carbon source
D-Glucose (C)
+0.3
-0.1
+0.0
-0.1
-0.2
carbon source
octanoate (C)
+0.4
-0.1
+0.1
-0.2
-0.3
carbon source
D-Glucose (C)
+0.2
+0.1
-0.2
-0.2
+0.1
carbon source
acetate (C)
+0.3
+0.1
+0.0
-0.0
-0.2
carbon source
Trisodium citrate (C)
+0.1
+0.1
+0.2
-0.1
+0.1
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