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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. S08-1
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
OH686_08685 and OH686_08690 are separated by 202 nucleotides
OH686_08690 and OH686_08695 are separated by 213 nucleotides
OH686_08695 and OH686_08700 are separated by 53 nucleotides
OH686_08700 and OH686_08705 are separated by 54 nucleotides
OH686_08685: OH686_08685 - Sensor histidine kinase PrrB (RegB) , at 1,768,442 to 1,769,713
_08685
OH686_08690: OH686_08690 - probable periplasmic protein, at 1,769,916 to 1,770,629
_08690
OH686_08695: OH686_08695 - Dipeptide ABC transporter, substrate-binding protein DppA, at 1,770,843 to 1,772,444
_08695
OH686_08700: OH686_08700 - Dipeptide ABC transporter, substrate-binding protein DppA, at 1,772,498 to 1,774,081
_08700
OH686_08705: OH686_08705 - Dipeptide ABC transporter, permease protein DppB, at 1,774,136 to 1,775,146
_08705
Group
Condition
OH686
_08685
OH686
_08690
OH686
_08695
OH686
_08700
OH686
_08705
carbon source
octanoate (C)
+0.5
-0.3
-0.2
+0.1
-0.1
carbon source
octanoate (C)
+0.3
-0.3
-0.2
+0.1
+0.1
carbon source
D-Glucose (C)
-0.2
-0.0
+0.1
-0.0
+0.2
carbon source
octanoate (C)
+0.1
-0.1
-0.0
+0.2
+0.1
carbon source
octanoate (C)
+0.5
+0.0
-0.3
+0.1
+0.0
carbon source
octanoate (C)
+0.3
-0.0
-0.0
+0.2
-0.2
carbon source
D-Glucose (C)
+0.0
-0.1
+0.1
+0.1
+0.2
carbon source
Trisodium citrate (C)
+0.1
-0.1
-0.1
+0.2
+0.1
carbon source
D-Glucose (C)
-0.1
-0.0
+0.1
+0.1
+0.2
carbon source
octanoate (C)
+0.4
+0.0
-0.2
+0.2
-0.1
carbon source
acetate (C)
+0.1
-0.1
+0.0
+0.2
+0.1
carbon source
acetate (C)
+0.1
-0.1
+0.0
+0.2
+0.1
carbon source
Trisodium citrate (C)
+0.3
+0.1
-0.1
+0.1
+0.0
carbon source
Trisodium citrate (C)
+0.1
-0.1
+0.1
+0.1
+0.2
carbon source
acetate (C)
+0.3
+0.1
-0.0
+0.2
-0.0
carbon source
D,L-Malic Acid (C)
+0.2
-0.0
+0.1
+0.2
+0.1
carbon source
D-Glucose (C)
-0.1
+0.0
+0.0
+0.3
+0.3
carbon source
D-Glucose (C)
-0.1
-0.0
+0.0
+0.2
+0.4
carbon source
Trisodium citrate (C)
+0.2
-0.1
+0.0
+0.1
+0.3
carbon source
Sorgoleone (C)
+0.2
+0.1
+0.0
+0.1
+0.1
carbon source
D,L-Malic Acid (C)
+0.1
+0.1
-0.0
+0.2
+0.2
carbon source
acetate (C)
-0.0
-0.0
+0.0
+0.4
+0.2
carbon source
D-Glucose (C)
-0.1
+0.0
+0.2
+0.2
+0.3
carbon source
Trisodium citrate (C)
+0.3
+0.1
+0.1
-0.0
+0.3
carbon source
acetate (C)
+0.2
-0.0
+0.1
+0.3
+0.1
carbon source
Trisodium citrate (C)
+0.2
+0.0
+0.0
+0.2
+0.3
carbon source
D-Glucose (C)
-0.0
-0.1
+0.1
+0.2
+0.7
carbon source
D-Glucose (C)
-0.1
+0.1
+0.3
+0.1
+0.7
carbon source
D-Glucose (C)
+0.1
+0.2
+0.3
+0.1
+0.6
carbon source
D-Glucose (C)
+0.1
+0.1
+0.3
+0.2
+0.6
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