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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. S08-1
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
OH686_08670 and OH686_08675 are separated by 109 nucleotides
OH686_08675 and OH686_08680 are separated by 124 nucleotides
OH686_08680 and OH686_08685 overlap by 8 nucleotides
OH686_08685 and OH686_08690 are separated by 202 nucleotides
OH686_08670: OH686_08670 - hypothetical protein, at 1,765,925 to 1,766,713
_08670
OH686_08675: OH686_08675 - Auxin efflux carrier family protein, at 1,766,823 to 1,767,764
_08675
OH686_08680: OH686_08680 - Dna binding response regulator PrrA (RegA), at 1,767,889 to 1,768,449
_08680
OH686_08685: OH686_08685 - Sensor histidine kinase PrrB (RegB) , at 1,768,442 to 1,769,713
_08685
OH686_08690: OH686_08690 - probable periplasmic protein, at 1,769,916 to 1,770,629
_08690
Group
Condition
OH686
_08670
OH686
_08675
OH686
_08680
OH686
_08685
OH686
_08690
carbon source
octanoate (C)
-0.2
-0.1
-0.9
+0.3
-0.3
carbon source
D-Glucose (C)
-0.1
-0.1
-0.3
-0.2
-0.0
carbon source
acetate (C)
+0.0
+0.0
-0.3
-0.2
-0.1
carbon source
D-Glucose (C)
-0.1
-0.1
-0.2
-0.1
+0.0
carbon source
D-Glucose (C)
+0.0
-0.0
-0.2
-0.1
-0.0
carbon source
octanoate (C)
+0.2
-0.0
-0.1
+0.1
-0.1
carbon source
acetate (C)
-0.1
+0.0
+0.2
+0.1
-0.1
carbon source
Sorgoleone (C)
-0.1
-0.1
+0.0
+0.2
+0.1
carbon source
acetate (C)
-0.0
-0.0
+0.2
+0.1
-0.1
carbon source
acetate (C)
+0.1
-0.1
+0.1
+0.1
+0.0
carbon source
acetate (C)
+0.0
-0.1
+0.2
+0.2
-0.0
carbon source
D-Glucose (C)
-0.0
-0.0
+0.5
-0.0
-0.1
carbon source
Trisodium citrate (C)
-0.1
+0.0
+0.4
+0.1
-0.1
carbon source
D,L-Malic Acid (C)
+0.0
+0.1
+0.2
+0.1
-0.1
carbon source
D,L-Malic Acid (C)
+0.1
-0.0
+0.1
+0.2
-0.0
carbon source
octanoate (C)
-0.0
+0.2
-0.0
+0.3
-0.0
carbon source
Trisodium citrate (C)
-0.1
-0.1
+0.5
+0.2
-0.1
carbon source
Trisodium citrate (C)
+0.0
-0.1
+0.5
+0.2
-0.0
carbon source
Trisodium citrate (C)
-0.0
-0.0
+0.5
+0.2
-0.1
carbon source
Trisodium citrate (C)
-0.0
-0.0
+0.6
+0.1
-0.1
carbon source
D-Glucose (C)
-0.0
+0.1
+0.6
-0.1
+0.1
carbon source
acetate (C)
+0.1
-0.0
+0.2
+0.3
+0.1
carbon source
Trisodium citrate (C)
-0.0
-0.1
+0.4
+0.3
+0.1
carbon source
octanoate (C)
+0.0
-0.1
+0.2
+0.5
+0.0
carbon source
Trisodium citrate (C)
-0.1
+0.1
+0.5
+0.2
+0.0
carbon source
Trisodium citrate (C)
-0.0
-0.0
+0.5
+0.3
+0.1
carbon source
D-Glucose (C)
-0.0
+0.0
+0.7
+0.1
+0.1
carbon source
octanoate (C)
+0.1
+0.2
+0.4
+0.5
-0.3
carbon source
D-Glucose (C)
-0.0
+0.1
+0.6
+0.1
+0.2
carbon source
octanoate (C)
+0.2
-0.0
+0.3
+0.4
+0.0
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