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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. S08-1
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500 nt
OH686_05850 and OH686_05855 are separated by 13 nucleotides
OH686_05855 and OH686_05860 are separated by 30 nucleotides
OH686_05860 and OH686_05865 are separated by 66 nucleotides
OH686_05865 and OH686_05870 are separated by 60 nucleotides
OH686_05850: OH686_05850 - hypothetical protein, at 1,179,551 to 1,179,805
_05850
OH686_05855: OH686_05855 - Rho-specific inhibitor of transcription termination (YaeO), at 1,179,819 to 1,180,097
_05855
OH686_05860: OH686_05860 - Transcriptional regulator, LysR family, at 1,180,128 to 1,181,096
_05860
OH686_05865: OH686_05865 - methylmalonate-semialdehyde dehydrogenase (acylating), at 1,181,163 to 1,182,674
_05865
OH686_05870: OH686_05870 - Branched-chain acyl-CoA dehydrogenase , at 1,182,735 to 1,183,898
_05870
Group
Condition
OH686
_05850
OH686
_05855
OH686
_05860
OH686
_05865
OH686
_05870
carbon source
octanoate (C)
+0.6
-0.8
-0.5
+0.1
-0.4
carbon source
acetate (C)
-0.3
-0.3
-0.3
+0.0
-0.1
carbon source
Trisodium citrate (C)
+0.2
-0.6
-0.1
-0.2
-0.1
carbon source
D-Glucose (C)
-0.4
-0.1
-0.0
-0.1
-0.1
carbon source
D,L-Malic Acid (C)
-0.1
-0.5
-0.0
+0.0
-0.1
carbon source
octanoate (C)
+0.4
-1.0
+0.0
-0.1
+0.1
carbon source
Trisodium citrate (C)
-0.2
-0.1
-0.1
-0.1
-0.0
carbon source
Trisodium citrate (C)
-0.1
-0.4
-0.1
-0.0
-0.1
carbon source
D-Glucose (C)
-0.2
-0.4
-0.0
+0.0
+0.1
carbon source
Trisodium citrate (C)
+0.2
-0.3
-0.2
-0.1
-0.1
carbon source
acetate (C)
-0.3
-0.3
+0.2
+0.1
-0.1
carbon source
D-Glucose (C)
-0.2
-0.3
+0.0
+0.0
-0.0
carbon source
D,L-Malic Acid (C)
+0.1
-0.4
-0.1
+0.1
-0.1
carbon source
Sorgoleone (C)
-0.0
-0.3
-0.0
-0.0
-0.1
carbon source
D-Glucose (C)
-0.1
-0.3
-0.1
+0.0
+0.0
carbon source
acetate (C)
-0.1
-0.2
-0.1
+0.0
-0.0
carbon source
octanoate (C)
+0.2
-0.5
-0.2
+0.0
+0.0
carbon source
acetate (C)
-0.1
-0.4
+0.0
+0.1
-0.0
carbon source
D-Glucose (C)
-0.2
-0.1
-0.1
+0.0
+0.1
carbon source
Trisodium citrate (C)
+0.0
-0.3
-0.1
+0.0
+0.1
carbon source
D-Glucose (C)
+0.1
-0.2
-0.1
+0.1
-0.1
carbon source
Sorgoleone (C)
+0.1
-0.3
+0.0
+0.1
-0.0
carbon source
D-Glucose (C)
-0.1
-0.2
+0.1
+0.1
-0.0
carbon source
octanoate (C)
-0.1
+0.4
-0.5
-0.1
+0.2
carbon source
Sorgoleone (C)
+0.1
-0.2
-0.0
+0.1
-0.1
carbon source
D-Glucose (C)
+0.0
-0.3
+0.2
-0.0
+0.0
carbon source
D-Glucose (C)
+0.0
-0.1
+0.1
-0.1
+0.1
carbon source
acetate (C)
+0.1
-0.2
+0.2
+0.1
-0.0
carbon source
octanoate (C)
+0.2
+0.1
+0.1
+0.1
+0.1
carbon source
octanoate (C)
-0.1
+0.4
+0.1
+0.1
+0.1
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