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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. S08-1
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500 nt
OH686_04360 and OH686_04365 overlap by 4 nucleotides
OH686_04365 and OH686_04370 overlap by 4 nucleotides
OH686_04370 and OH686_04375 overlap by 4 nucleotides
OH686_04375 and OH686_04380 are separated by 6 nucleotides
OH686_04360: OH686_04360 - General secretion pathway protein K, at 903,538 to 904,491
_04360
OH686_04365: OH686_04365 - type II secretion system protein J, at 904,488 to 905,201
_04365
OH686_04370: OH686_04370 - type II secretion system protein I, at 905,198 to 905,587
_04370
OH686_04375: OH686_04375 - type II secretion system protein H, at 905,584 to 906,120
_04375
OH686_04380: OH686_04380 - type II secretion system protein G, at 906,127 to 906,552
_04380
Group
Condition
OH686
_04360
OH686
_04365
OH686
_04370
OH686
_04375
OH686
_04380
carbon source
octanoate (C)
-0.0
-1.3
-1.4
-0.4
N.D.
carbon source
D-Glucose (C)
-0.3
+0.1
-0.6
-0.3
N.D.
carbon source
D-Glucose (C)
-0.0
+0.0
-0.4
-0.4
N.D.
carbon source
D-Glucose (C)
+0.2
+0.1
-1.0
+0.0
N.D.
carbon source
D-Glucose (C)
-0.1
-0.2
-0.3
-0.0
N.D.
carbon source
D-Glucose (C)
-0.1
+0.0
-0.3
-0.2
N.D.
carbon source
D-Glucose (C)
-0.0
+0.3
-0.5
-0.2
N.D.
carbon source
Sorgoleone (C)
+0.1
+0.1
-0.4
-0.2
N.D.
carbon source
Trisodium citrate (C)
+0.0
+0.1
-0.4
-0.1
N.D.
carbon source
D-Glucose (C)
-0.1
+0.3
-0.5
-0.0
N.D.
carbon source
D,L-Malic Acid (C)
-0.0
+0.1
-0.0
-0.4
N.D.
carbon source
Trisodium citrate (C)
+0.1
+0.1
-0.5
+0.1
N.D.
carbon source
D-Glucose (C)
-0.1
+0.1
-0.3
+0.0
N.D.
carbon source
acetate (C)
+0.0
+0.2
-0.3
-0.2
N.D.
carbon source
D-Glucose (C)
-0.1
-0.1
+0.1
-0.2
N.D.
carbon source
Trisodium citrate (C)
+0.0
-0.1
+0.2
-0.2
N.D.
carbon source
acetate (C)
+0.1
+0.1
-0.2
-0.1
N.D.
carbon source
Sorgoleone (C)
+0.1
+0.2
-0.2
-0.1
N.D.
carbon source
D-Glucose (C)
+0.0
-0.0
+0.3
-0.3
N.D.
carbon source
Sorgoleone (C)
-0.1
+0.2
+0.2
-0.2
N.D.
carbon source
Trisodium citrate (C)
+0.2
-0.1
+0.2
-0.2
N.D.
carbon source
Trisodium citrate (C)
+0.2
+0.0
+0.1
-0.2
N.D.
carbon source
D,L-Malic Acid (C)
+0.0
+0.3
+0.0
-0.2
N.D.
carbon source
acetate (C)
+0.1
+0.4
-0.0
-0.2
N.D.
carbon source
octanoate (C)
+0.3
+0.3
+0.4
-0.6
N.D.
carbon source
octanoate (C)
+0.2
-0.4
+0.8
-0.4
N.D.
carbon source
octanoate (C)
-0.0
+0.2
+0.8
-0.4
N.D.
carbon source
Trisodium citrate (C)
-0.0
+0.1
+0.6
-0.1
N.D.
carbon source
octanoate (C)
+0.2
+0.1
+0.3
+0.2
N.D.
carbon source
octanoate (C)
+0.1
+0.4
+0.4
-0.0
N.D.
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