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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. S08-1
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500 nt
OH686_00220 and OH686_00225 are separated by 61 nucleotides
OH686_00225 and OH686_00230 are separated by 212 nucleotides
OH686_00230 and OH686_00235 are separated by 29 nucleotides
OH686_00235 and OH686_00240 are separated by 83 nucleotides
OH686_00220: OH686_00220 - isocitrate dehydrogenase, NADP-dependent, at 44,161 to 45,417
_00220
OH686_00225: OH686_00225 - cold shock domain protein CspD, at 45,479 to 45,760
_00225
OH686_00230: OH686_00230 - ATP-dependent Clp protease adaptor protein ClpS, at 45,973 to 46,335
_00230
OH686_00235: OH686_00235 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 46,365 to 48,635
_00235
OH686_00240: OH686_00240 - translation initiation factor IF-1, at 48,719 to 48,937
_00240
Group
Condition
OH686
_00220
OH686
_00225
OH686
_00230
OH686
_00235
OH686
_00240
carbon source
octanoate (C)
N.D.
-0.2
-1.6
-2.0
N.D.
carbon source
octanoate (C)
N.D.
-0.1
-1.9
-1.6
N.D.
carbon source
octanoate (C)
N.D.
+0.2
-1.3
-2.0
N.D.
carbon source
octanoate (C)
N.D.
-0.9
-1.1
-1.1
N.D.
carbon source
octanoate (C)
N.D.
+0.1
-1.4
-1.7
N.D.
carbon source
D-Glucose (C)
N.D.
+0.1
-0.3
-2.3
N.D.
carbon source
D-Glucose (C)
N.D.
+0.0
-0.2
-2.4
N.D.
carbon source
acetate (C)
N.D.
-0.2
-0.7
-1.5
N.D.
carbon source
D-Glucose (C)
N.D.
+0.3
-0.4
-2.2
N.D.
carbon source
D-Glucose (C)
N.D.
+0.4
-0.3
-2.4
N.D.
carbon source
acetate (C)
N.D.
+0.1
-1.0
-1.5
N.D.
carbon source
D-Glucose (C)
N.D.
+0.2
-0.5
-1.9
N.D.
carbon source
D-Glucose (C)
N.D.
-0.1
-0.3
-1.8
N.D.
carbon source
D-Glucose (C)
N.D.
+0.2
-0.2
-2.2
N.D.
carbon source
D-Glucose (C)
N.D.
+0.4
-0.2
-2.2
N.D.
carbon source
Trisodium citrate (C)
N.D.
+0.0
-0.5
-1.6
N.D.
carbon source
Trisodium citrate (C)
N.D.
+0.4
-0.4
-2.0
N.D.
carbon source
acetate (C)
N.D.
-0.1
-0.7
-1.2
N.D.
carbon source
Trisodium citrate (C)
N.D.
+0.0
-0.4
-1.6
N.D.
carbon source
Trisodium citrate (C)
N.D.
-0.2
-0.4
-1.3
N.D.
carbon source
D-Glucose (C)
N.D.
+0.3
-0.3
-1.8
N.D.
carbon source
D-Glucose (C)
N.D.
+0.2
-0.2
-1.8
N.D.
carbon source
D-Glucose (C)
N.D.
+0.1
-0.5
-1.5
N.D.
carbon source
Trisodium citrate (C)
N.D.
-0.0
-0.4
-1.4
N.D.
carbon source
D-Glucose (C)
N.D.
+0.3
-0.4
-1.7
N.D.
carbon source
Trisodium citrate (C)
N.D.
-0.1
-0.4
-1.2
N.D.
carbon source
acetate (C)
N.D.
+0.1
-0.5
-1.1
N.D.
carbon source
Trisodium citrate (C)
N.D.
+0.2
-0.3
-1.3
N.D.
carbon source
octanoate (C)
N.D.
+0.9
-0.8
-1.5
N.D.
carbon source
acetate (C)
N.D.
+0.2
-0.5
-1.0
N.D.
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