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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR27
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Top 22 experiments (either direction), sorted by average fitness
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500 nt
citX and citG overlap by 26 nucleotides
citG and citT are separated by 50 nucleotides
citT and rna are separated by 113 nucleotides
rna and rnk are separated by 229 nucleotides
NOLOHH_23840: citX - Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase, at 4,691,888 to 4,692,439
citX
NOLOHH_23845: citG - triphosphoribosyl-dephospho-CoA synthase CitG, at 4,692,414 to 4,693,292
citG
NOLOHH_23850: citT - citrate/succinate antiporter CitT, at 4,693,343 to 4,694,806
citT
NOLOHH_23855: rna - ribonuclease I, at 4,694,920 to 4,695,726
rna
NOLOHH_23860: rnk - nucleoside diphosphate kinase regulator, at 4,695,956 to 4,696,366
rnk
Group
Condition
NOLOHH
_23840
NOLOHH
_23845
NOLOHH
_23850
NOLOHH
_23855
NOLOHH
_23860
citX
citG
citT
rna
rnk
phage
Bas69
-0.8
-0.1
-0.3
+0.2
-2.8
phage
TP2
-0.5
-0.8
-0.4
+0.3
-1.8
carbon source
Sodium-DL-Lactate
-0.1
-0.1
+0.2
+0.2
-1.1
phage
TP12
-0.2
+0.4
+0.1
+0.0
-1.0
carbon source
Casamino-acids
-0.2
-0.1
+0.1
-0.2
-0.2
phage
RB49
+0.4
+0.1
-0.2
-0.3
-0.4
carbon source
L-Rhamnose
+0.5
-0.5
-0.0
-0.0
-0.2
phage
K5
+0.0
+0.0
+0.0
+0.3
-0.5
carbon source
Casamino-acids
+0.3
+0.2
+0.2
+0.1
-0.7
carbon source
D-Glucose
-0.5
+0.4
+0.3
+0.3
-0.4
carbon source
D-Glucose
+0.0
-0.0
+0.1
+0.1
-0.0
carbon source
L-Rhamnose
-0.1
-0.0
-0.2
+0.1
+0.3
carbon source
Sodium-DL-Lactate
-0.2
+0.1
-0.0
-0.1
+0.5
phage
TP12
-0.0
+0.3
-0.0
+0.1
-0.0
carbon source
L-Arabinose
-0.2
+0.1
+0.1
+0.4
-0.0
phage
Bas67
+0.3
-0.2
+0.2
-0.1
+0.3
phage
Bas09
+0.1
+0.0
+0.2
+0.2
+0.0
phage
K5
+0.3
+0.2
+0.1
+0.4
-0.5
no phage control
Control_ECOR27
+0.6
+0.3
-0.2
+0.6
-0.5
phage
Bas67
+0.3
-0.0
+0.1
+0.3
+0.3
carbon source
L-Arabinose
+0.2
-0.0
+0.1
+0.5
+0.4
phage
TP7
+0.6
+0.4
+0.0
+0.3
+0.6
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