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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR27
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Top 22 experiments (either direction), sorted by average fitness
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500 nt
ybhJ and citT are separated by 281 nucleotides
citT and ybhH are separated by 75 nucleotides
ybhH and ybhD are separated by 183 nucleotides
ybhD and pgl are separated by 40 nucleotides
NOLOHH_23085: ybhJ - hydratase, at 4,539,042 to 4,541,303
ybhJ
NOLOHH_23090: citT - Di- and tricarboxylate antiporter, at 4,541,585 to 4,542,919
citT
NOLOHH_23095: ybhH - 4-oxalomesaconate tautomerase, at 4,542,995 to 4,544,047
ybhH
NOLOHH_23100: ybhD - Uncharacterized HTH-type transcriptional regulator YbhD, at 4,544,231 to 4,545,184
ybhD
NOLOHH_23105: pgl - 6-phosphogluconolactonase, at 4,545,225 to 4,546,220
pgl
Group
Condition
NOLOHH
_23085
NOLOHH
_23090
NOLOHH
_23095
NOLOHH
_23100
NOLOHH
_23105
ybhJ
citT
ybhH
ybhD
pgl
phage
RB49
+0.0
+0.1
-1.9
-0.4
-0.6
phage
TP12
-0.6
+0.1
-0.2
-0.2
-1.4
phage
Bas09
-0.1
-0.1
-0.2
-0.8
-0.8
carbon source
D-Glucose
+0.0
-0.2
+0.1
-0.6
-1.3
phage
TP2
-0.1
+0.1
-0.1
-0.5
-0.8
no phage control
Control_ECOR27
+0.1
+0.3
-0.2
-0.6
-1.0
phage
Bas67
-0.0
+0.2
-0.1
-0.5
-1.1
phage
K5
-0.1
-0.0
-0.1
-0.1
-1.0
carbon source
L-Arabinose
-0.1
-0.1
+0.4
-0.1
-1.4
phage
TP12
-0.3
+0.1
+0.3
-0.2
-1.1
phage
K5
+0.1
-0.3
+0.3
-0.0
-1.1
phage
TP7
+0.0
+0.1
+0.1
-1.0
+0.0
phage
Bas67
-0.1
+0.2
-0.3
+0.4
-1.0
carbon source
D-Glucose
-0.4
+0.2
+0.2
+0.1
-0.8
carbon source
L-Arabinose
+0.3
+0.6
+0.1
+0.8
-1.6
carbon source
Sodium-DL-Lactate
+0.2
+0.1
+0.0
-0.0
+0.0
carbon source
L-Rhamnose
+0.2
+0.2
+0.6
-0.1
-0.6
carbon source
Casamino-acids
-0.2
-0.1
+0.1
+0.3
+0.3
carbon source
L-Rhamnose
+0.2
-0.1
+0.4
+0.6
-0.5
phage
Bas69
+0.1
+0.0
+0.6
-0.6
+0.5
carbon source
Sodium-DL-Lactate
-0.0
-0.1
+0.3
+0.4
+0.2
carbon source
Casamino-acids
+0.3
-0.1
+0.6
+0.5
-0.2
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