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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR27
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Top 22 experiments (either direction), sorted by average fitness
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500 nt
NOLOHH_22840 and NOLOHH_22845 are separated by 11 nucleotides
NOLOHH_22845 and NOLOHH_22850 are separated by 13 nucleotides
NOLOHH_22850 and NOLOHH_22855 are separated by 38 nucleotides
NOLOHH_22855 and NOLOHH_22860 overlap by 4 nucleotides
NOLOHH_22840: NOLOHH_22840 - head protein, at 4,510,065 to 4,511,336
_22840
NOLOHH_22845: NOLOHH_22845 - phage capsid protein, at 4,511,348 to 4,512,232
_22845
NOLOHH_22850: NOLOHH_22850 - portal protein, at 4,512,246 to 4,514,336
_22850
NOLOHH_22855: NOLOHH_22855 - PBSX family phage terminase large subunit, at 4,514,375 to 4,515,787
_22855
NOLOHH_22860: NOLOHH_22860 - terminase small subunit, at 4,515,784 to 4,516,311
_22860
Group
Condition
NOLOHH
_22840
NOLOHH
_22845
NOLOHH
_22850
NOLOHH
_22855
NOLOHH
_22860
no phage control
Control_ECOR27
-0.5
-0.6
-0.7
-0.3
-1.2
phage
Bas69
-0.6
-0.8
-0.6
-0.2
-1.1
phage
K5
-0.4
-0.6
-0.6
-0.1
-1.0
phage
TP7
-0.6
-0.6
-0.7
+0.3
-0.8
phage
Bas67
-0.4
-0.1
-0.7
-0.0
-1.2
phage
RB49
-0.3
-0.1
-0.5
-0.0
-1.1
phage
Bas67
-0.2
-0.5
-0.8
-0.3
-0.1
phage
K5
-0.5
-0.2
-0.6
-0.5
+0.1
carbon source
L-Rhamnose
-0.2
+0.1
+0.1
-0.2
-1.3
carbon source
L-Rhamnose
-0.2
-0.3
-0.3
-0.5
-0.2
phage
Bas09
-0.3
-0.3
-0.4
-0.3
-0.1
carbon source
Sodium-DL-Lactate
-0.3
-0.4
-0.2
-0.2
-0.1
carbon source
D-Glucose
-0.2
+0.0
-0.2
-0.1
-0.4
carbon source
Casamino-acids
-0.0
-0.2
-0.1
-0.4
-0.1
carbon source
Casamino-acids
+0.0
-0.2
-0.1
+0.1
-0.3
carbon source
L-Arabinose
-0.0
+0.3
-0.3
-0.7
+0.4
carbon source
Sodium-DL-Lactate
-0.4
+0.1
-0.0
+0.2
-0.2
carbon source
D-Glucose
-0.1
-0.1
-0.2
+0.0
+0.1
carbon source
L-Arabinose
+0.1
+0.2
-0.5
+0.2
+0.0
phage
TP2
+0.2
+0.0
-0.4
+0.4
+0.2
phage
TP12
+0.2
+0.4
+0.1
+0.4
+0.3
phage
TP12
+0.4
+0.5
+0.2
+0.3
+0.1
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