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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR27
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Top 22 experiments (either direction), sorted by average fitness
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500 nt
ldtB and ybiR are separated by 58 nucleotides
ybiR and mntR overlap by 4 nucleotides
mntR and mntS are separated by 185 nucleotides
mntS and opgE are separated by 271 nucleotides
NOLOHH_22515: ldtB - L,D-transpeptidase, at 4,448,594 to 4,449,514
ldtB
NOLOHH_22520: ybiR - Inner membrane protein YbiR, at 4,449,573 to 4,450,691
ybiR
NOLOHH_22525: mntR - manganese-binding transcriptional regulator MntR, at 4,450,688 to 4,451,155
mntR
NOLOHH_22530: mntS - manganase accumulation protein MntS, at 4,451,341 to 4,451,469
mntS
NOLOHH_22535: opgE - phosphoethanolamine transferase, at 4,451,741 to 4,453,324
opgE
Group
Condition
NOLOHH
_22515
NOLOHH
_22520
NOLOHH
_22525
NOLOHH
_22530
NOLOHH
_22535
ldtB
ybiR
mntR
mntS
opgE
carbon source
L-Rhamnose
-0.0
+0.1
+0.7
-5.0
+0.0
carbon source
L-Rhamnose
+0.0
+0.1
+0.4
-4.6
+0.3
phage
RB49
-0.0
-0.1
-3.7
-0.2
+0.3
carbon source
L-Arabinose
+0.0
-0.2
-3.1
+0.1
+0.2
carbon source
Casamino-acids
+0.1
-0.1
+0.6
-2.1
-0.6
phage
K5
-1.4
-0.1
-0.5
+0.2
+0.4
phage
K5
-1.0
-0.3
-0.2
+0.1
+0.2
phage
TP7
+0.1
-0.0
-0.5
-0.7
-0.0
phage
Bas67
-0.2
-0.2
-0.4
+0.1
+0.0
carbon source
Sodium-DL-Lactate
-0.4
+0.2
+0.2
-0.5
-0.2
carbon source
Sodium-DL-Lactate
-0.4
+0.0
-0.0
-0.3
+0.0
phage
Bas67
-0.2
-0.2
-0.5
+0.4
+0.2
phage
TP12
+0.1
-0.4
+0.2
+0.4
-0.6
phage
TP2
+1.5
-0.3
-0.6
-0.8
+0.1
phage
Bas09
-0.2
-0.2
+0.0
+0.3
+0.1
carbon source
D-Glucose
+0.1
+0.1
+0.4
-0.3
-0.1
carbon source
Casamino-acids
-0.1
+0.3
-0.1
+0.0
+0.1
phage
TP12
-0.0
-0.3
-0.1
+0.2
+0.4
phage
Bas69
+1.9
-0.2
-0.3
-0.6
-0.5
no phage control
Control_ECOR27
+0.2
+0.0
-0.3
+0.1
+0.3
carbon source
L-Arabinose
+0.1
-0.2
+0.7
+0.2
-0.1
carbon source
D-Glucose
+0.0
-0.1
+0.4
+1.5
+0.3
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