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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR27
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500 nt
narZ and narH overlap by 4 nucleotides
narH and narW overlap by 1 nucleotides
narW and narI overlap by 4 nucleotides
narI and yddE are separated by 78 nucleotides
NOLOHH_19085: narZ - nitrate reductase Z subunit alpha, at 3,752,171 to 3,755,911
narZ
NOLOHH_19090: narH - nitrate reductase subunit beta, at 3,755,908 to 3,757,452
narH
NOLOHH_19095: narW - nitrate reductase molybdenum cofactor assembly chaperone, at 3,757,452 to 3,758,147
narW
NOLOHH_19100: narI - respiratory nitrate reductase subunit gamma, at 3,758,144 to 3,758,824
narI
NOLOHH_19105: yddE - PhzF family isomerase, at 3,758,903 to 3,759,796
yddE
Group
Condition
NOLOHH
_19085
NOLOHH
_19090
NOLOHH
_19095
NOLOHH
_19100
NOLOHH
_19105
narZ
narH
narW
narI
yddE
carbon source
L-Arabinose
-0.3
-0.5
-4.4
N.D.
-0.5
phage
TP12
-0.0
-0.6
-2.3
N.D.
-0.2
carbon source
L-Arabinose
-0.7
+0.2
-1.9
N.D.
-0.7
phage
K5
-0.5
+0.1
-1.9
N.D.
-0.2
phage
Bas69
+0.2
-0.5
-2.2
N.D.
+0.1
carbon source
L-Rhamnose
+0.4
-0.4
-1.4
N.D.
-0.3
phage
TP7
+0.1
-0.7
-1.5
N.D.
+0.5
phage
Bas67
+0.5
-0.7
-0.7
N.D.
-0.2
phage
RB49
+0.0
-0.2
-0.8
N.D.
-0.1
phage
Bas67
+0.4
-0.1
-1.1
N.D.
-0.2
carbon source
Casamino-acids
-0.2
-0.7
+0.3
N.D.
+0.2
carbon source
Casamino-acids
-0.1
-0.1
-0.5
N.D.
+0.2
carbon source
L-Rhamnose
-0.1
-1.2
+0.5
N.D.
+0.3
phage
Bas09
+0.1
+0.1
-0.7
N.D.
+0.1
no phage control
Control_ECOR27
+0.4
+0.1
-0.8
N.D.
-0.1
phage
TP2
+0.3
-0.0
-1.1
N.D.
+0.7
carbon source
D-Glucose
+0.0
-0.3
+0.4
N.D.
-0.1
phage
TP12
-0.9
+0.2
+0.5
N.D.
+0.2
carbon source
Sodium-DL-Lactate
-0.2
-0.0
+0.3
N.D.
-0.0
phage
K5
+0.2
+0.1
-0.6
N.D.
+0.4
carbon source
Sodium-DL-Lactate
+0.2
+0.1
+0.5
N.D.
+0.6
carbon source
D-Glucose
+0.5
-0.5
+1.4
N.D.
+0.3
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