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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR27
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500 nt
dosP and ddpX are separated by 257 nucleotides
ddpX and ddpA are separated by 13 nucleotides
ddpA and ddpB are separated by 1 nucleotides
ddpB and ddpC overlap by 4 nucleotides
NOLOHH_18950: dosP - oxygen-sensing cyclic-di-GMP phosphodiesterase, at 3,722,621 to 3,725,020
dosP
NOLOHH_18955: ddpX - D-alanyl-D-alanine dipeptidase, at 3,725,278 to 3,725,859
ddpX
NOLOHH_18960: ddpA - putative D,D-dipeptide-binding periplasmic protein DdpA, at 3,725,873 to 3,727,423
ddpA
NOLOHH_18965: ddpB - putative D,D-dipeptide transport system permease protein DdpB, at 3,727,425 to 3,728,447
ddpB
NOLOHH_18970: ddpC - D,D-dipeptide ABC transporter permease, at 3,728,444 to 3,729,340
ddpC
Group
Condition
NOLOHH
_18950
NOLOHH
_18955
NOLOHH
_18960
NOLOHH
_18965
NOLOHH
_18970
dosP
ddpX
ddpA
ddpB
ddpC
carbon source
L-Arabinose
-0.4
+0.3
-0.9
-1.6
-1.5
phage
Bas31
+0.9
-3.4
+0.0
-0.0
-1.2
phage
TP2
-0.9
-0.6
-0.4
+1.2
-1.1
phage
Bas07
-0.2
-0.3
+0.5
-1.7
+0.2
phage
RB51
+0.2
-1.7
+0.8
-0.6
-0.1
carbon source
L-Rhamnose
-0.1
-2.2
+1.4
-0.8
+0.4
phage
Bas25
+0.6
-0.4
+0.1
-1.6
+0.1
phage
Bas31
+1.0
-2.3
+0.2
+0.5
-0.4
carbon source
Casamino-acids
-0.7
-0.2
+0.7
-0.4
-0.4
phage
Bas21
-0.6
-0.5
+0.7
-0.7
+0.3
carbon source
Casamino-acids
+0.7
+0.3
-1.9
+0.6
-0.5
carbon source
Sodium-DL-Lactate
-0.2
-0.3
+0.3
+0.6
-1.1
phage
Bas19
-0.0
+0.0
-1.4
+0.8
+0.1
no phage control
Control_ECOR27
-0.6
+0.0
+0.4
-1.1
+0.8
phage
Bas45
+1.0
+0.2
-0.5
-1.1
-0.2
phage
Bas67
-0.7
+0.0
+1.0
-0.5
-0.1
carbon source
D-Glucose
-2.3
+0.4
+0.8
+1.3
-0.4
no phage control
Control_ECOR27
-0.2
-0.6
-0.5
+0.7
+0.4
carbon source
D-Glucose
-0.0
+0.5
+0.4
+0.2
-1.3
phage
TP15
+0.7
-0.6
+0.9
-1.0
+0.4
phage
Bas68
+0.3
-0.9
+0.4
+0.4
+0.2
phage
TP12
+0.1
-1.2
+0.2
+1.4
+0.2
carbon source
L-Arabinose
-0.7
-0.9
+0.7
+0.7
+1.1
phage
Bas10
+0.2
+0.4
+1.0
-0.6
-0.1
phage
Bas07
-0.3
+0.3
+0.8
-0.6
+0.7
phage
JK16
+0.2
+0.7
+1.0
-0.8
-0.1
phage
RB51
+0.6
+0.2
-0.6
+0.9
+0.1
phage
Bas21
-0.3
+0.3
+0.2
+0.7
+0.6
phage
K25
-0.3
+0.0
+0.6
+0.7
+0.6
phage
K5
+0.2
+0.8
+1.0
-0.3
+0.2
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