Fitness for 5 genes in Escherichia coli ECOR27

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500 ntdosP and ddpX are separated by 257 nucleotidesddpX and ddpA are separated by 13 nucleotidesddpA and ddpB are separated by 1 nucleotidesddpB and ddpC overlap by 4 nucleotides NOLOHH_18950: dosP - oxygen-sensing cyclic-di-GMP phosphodiesterase, at 3,722,621 to 3,725,020 dosP NOLOHH_18955: ddpX - D-alanyl-D-alanine dipeptidase, at 3,725,278 to 3,725,859 ddpX NOLOHH_18960: ddpA - putative D,D-dipeptide-binding periplasmic protein DdpA, at 3,725,873 to 3,727,423 ddpA NOLOHH_18965: ddpB - putative D,D-dipeptide transport system permease protein DdpB, at 3,727,425 to 3,728,447 ddpB NOLOHH_18970: ddpC - D,D-dipeptide ABC transporter permease, at 3,728,444 to 3,729,340 ddpC
Group Condition NOLOHH_18950 NOLOHH_18955 NOLOHH_18960 NOLOHH_18965 NOLOHH_18970
dosP ddpX ddpA ddpB ddpC
carbon source L-Arabinose -0.4 +0.3 -0.9 -1.6 -1.5
phage Bas31 +0.9 -3.4 +0.0 -0.0 -1.2
phage TP2 -0.9 -0.6 -0.4 +1.2 -1.1
phage Bas07 -0.2 -0.3 +0.5 -1.7 +0.2
phage RB51 +0.2 -1.7 +0.8 -0.6 -0.1
carbon source L-Rhamnose -0.1 -2.2 +1.4 -0.8 +0.4
phage Bas25 +0.6 -0.4 +0.1 -1.6 +0.1
phage Bas31 +1.0 -2.3 +0.2 +0.5 -0.4
carbon source Casamino-acids -0.7 -0.2 +0.7 -0.4 -0.4
phage Bas21 -0.6 -0.5 +0.7 -0.7 +0.3
carbon source Casamino-acids +0.7 +0.3 -1.9 +0.6 -0.5
carbon source Sodium-DL-Lactate -0.2 -0.3 +0.3 +0.6 -1.1
phage Bas19 -0.0 +0.0 -1.4 +0.8 +0.1
no phage control Control_ECOR27 -0.6 +0.0 +0.4 -1.1 +0.8
phage Bas45 +1.0 +0.2 -0.5 -1.1 -0.2
phage Bas67 -0.7 +0.0 +1.0 -0.5 -0.1
carbon source D-Glucose -2.3 +0.4 +0.8 +1.3 -0.4
no phage control Control_ECOR27 -0.2 -0.6 -0.5 +0.7 +0.4
carbon source D-Glucose -0.0 +0.5 +0.4 +0.2 -1.3
phage TP15 +0.7 -0.6 +0.9 -1.0 +0.4
phage Bas68 +0.3 -0.9 +0.4 +0.4 +0.2
phage TP12 +0.1 -1.2 +0.2 +1.4 +0.2
carbon source L-Arabinose -0.7 -0.9 +0.7 +0.7 +1.1
phage Bas10 +0.2 +0.4 +1.0 -0.6 -0.1
phage Bas07 -0.3 +0.3 +0.8 -0.6 +0.7
phage JK16 +0.2 +0.7 +1.0 -0.8 -0.1
phage RB51 +0.6 +0.2 -0.6 +0.9 +0.1
phage Bas21 -0.3 +0.3 +0.2 +0.7 +0.6
phage K25 -0.3 +0.0 +0.6 +0.7 +0.6
phage K5 +0.2 +0.8 +1.0 -0.3 +0.2
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