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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR27
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Top 22 experiments (either direction), sorted by average fitness
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500 nt
astC and astA overlap by 4 nucleotides
astA and astD overlap by 4 nucleotides
astD and astB overlap by 4 nucleotides
astB and astE overlap by 8 nucleotides
NOLOHH_17420: astC - succinylornithine/acetylornithine transaminase, at 3,419,944 to 3,421,164
astC
NOLOHH_17425: astA - arginine N-succinyltransferase, at 3,421,161 to 3,422,195
astA
NOLOHH_17430: astD - succinylglutamate-semialdehyde dehydrogenase, at 3,422,192 to 3,423,670
astD
NOLOHH_17435: astB - N-succinylarginine dihydrolase, at 3,423,667 to 3,425,010
astB
NOLOHH_17440: astE - succinylglutamate desuccinylase, at 3,425,003 to 3,425,971
astE
Group
Condition
NOLOHH
_17420
NOLOHH
_17425
NOLOHH
_17430
NOLOHH
_17435
NOLOHH
_17440
astC
astA
astD
astB
astE
carbon source
L-Arabinose
-0.0
-0.2
-1.1
+0.3
-5.7
phage
TP12
-0.1
-0.0
-0.2
-3.0
-1.8
phage
Bas67
-0.0
-1.2
-0.0
-2.0
-0.5
phage
Bas09
-0.0
+0.2
-0.3
-0.3
-3.0
carbon source
Casamino-acids
+0.1
-0.9
-0.3
+0.0
-2.3
phage
TP2
-0.1
-0.4
-0.1
-2.9
+0.3
phage
K5
-0.2
-0.1
+0.4
-1.1
-2.1
phage
Bas69
+0.3
-0.5
-0.1
-0.2
-2.3
carbon source
L-Rhamnose
-0.2
-1.2
-1.1
+0.8
-0.6
phage
RB49
-0.2
-1.3
+0.2
-0.5
-0.4
phage
K5
-0.0
+0.6
-0.0
-1.2
-1.0
no phage control
Control_ECOR27
+0.2
+0.6
-0.8
-0.9
-0.2
carbon source
L-Arabinose
+0.3
-1.2
+0.3
-0.7
+0.2
phage
TP7
+0.1
+0.3
-0.2
-1.3
+0.1
phage
Bas67
-0.0
+0.2
+1.0
-0.9
-1.2
carbon source
D-Glucose
+0.1
-0.7
-0.1
-0.1
+0.4
carbon source
Sodium-DL-Lactate
-0.1
+0.0
-0.2
+0.2
-0.2
carbon source
D-Glucose
-0.1
+0.1
-0.3
+0.7
-0.2
carbon source
Sodium-DL-Lactate
-0.1
+0.3
+0.3
+1.0
-0.2
carbon source
L-Rhamnose
-0.0
-0.6
-0.4
+1.2
+1.3
phage
TP12
+0.0
+0.5
+0.8
+0.1
+0.2
carbon source
Casamino-acids
+0.4
-0.3
+0.6
+0.3
+0.8
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