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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR27
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500 nt
copD and copD are separated by 12 nucleotides
copD and pphA are separated by 395 nucleotides
pphA and yebW are separated by 0 nucleotides
yebW and yebV are separated by 20 nucleotides
NOLOHH_16915: copD - copper homeostasis membrane protein CopD, at 3,324,097 to 3,324,969
copD
NOLOHH_16920: copD - copper homeostasis membrane protein CopD, at 3,324,982 to 3,325,323
copD
NOLOHH_16935: pphA - protein-serine/threonine phosphatase, at 3,325,719 to 3,326,375
pphA
NOLOHH_16940: yebW - Uncharacterized protein YebW, at 3,326,376 to 3,326,651
yebW
NOLOHH_16945: yebV - Uncharacterized protein YebV, at 3,326,672 to 3,326,908
yebV
Group
Condition
NOLOHH
_16915
NOLOHH
_16920
NOLOHH
_16935
NOLOHH
_16940
NOLOHH
_16945
copD
copD
pphA
yebW
yebV
carbon source
Casamino-acids
-0.1
-1.2
N.D.
-0.5
N.D.
carbon source
Casamino-acids
-0.5
-0.4
N.D.
-0.8
N.D.
carbon source
L-Arabinose
-0.2
-1.1
N.D.
+0.0
N.D.
phage
TP7
+0.0
-2.0
N.D.
+0.7
N.D.
phage
TP2
-0.2
-1.0
N.D.
+0.0
N.D.
no phage control
Control_ECOR27
+0.1
-1.3
N.D.
+0.4
N.D.
phage
K5
+0.5
-0.9
N.D.
-0.2
N.D.
carbon source
L-Rhamnose
+0.3
+0.9
N.D.
-1.7
N.D.
carbon source
Sodium-DL-Lactate
-0.2
+0.1
N.D.
-0.1
N.D.
carbon source
Sodium-DL-Lactate
+0.3
+0.1
N.D.
-0.5
N.D.
phage
Bas67
-0.1
-0.8
N.D.
+1.1
N.D.
carbon source
D-Glucose
-0.4
+0.0
N.D.
+0.6
N.D.
phage
RB49
+0.1
-0.9
N.D.
+1.2
N.D.
phage
Bas67
+0.1
-0.6
N.D.
+0.8
N.D.
carbon source
L-Rhamnose
+0.5
+0.6
N.D.
-0.7
N.D.
carbon source
D-Glucose
-0.1
+0.1
N.D.
+0.5
N.D.
phage
TP12
+0.2
-0.6
N.D.
+0.9
N.D.
carbon source
L-Arabinose
+0.3
+0.6
N.D.
-0.3
N.D.
phage
Bas69
+0.3
+0.0
N.D.
+0.7
N.D.
phage
TP12
-0.0
+0.4
N.D.
+1.2
N.D.
phage
Bas09
+0.2
+0.3
N.D.
+1.4
N.D.
phage
K5
+0.2
+0.4
N.D.
+1.4
N.D.
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