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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR27
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Top 22 experiments (either direction), sorted by average fitness
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500 nt
yobB and holE are separated by 101 nucleotides
holE and yobA are separated by 138 nucleotides
yobA and copD are separated by 3 nucleotides
copD and copD are separated by 12 nucleotides
NOLOHH_16900: yobB - Uncharacterized protein YobB, at 3,322,592 to 3,323,248
yobB
NOLOHH_16905: holE - DNA polymerase III subunit theta, at 3,323,350 to 3,323,580
holE
NOLOHH_16910: yobA - CopC domain-containing protein YobA, at 3,323,719 to 3,324,093
yobA
NOLOHH_16915: copD - copper homeostasis membrane protein CopD, at 3,324,097 to 3,324,969
copD
NOLOHH_16920: copD - copper homeostasis membrane protein CopD, at 3,324,982 to 3,325,323
copD
Group
Condition
NOLOHH
_16900
NOLOHH
_16905
NOLOHH
_16910
NOLOHH
_16915
NOLOHH
_16920
yobB
holE
yobA
copD
copD
phage
RB49
-1.7
-1.5
-0.6
+0.1
-0.9
carbon source
L-Arabinose
-1.8
+0.5
-0.1
-0.2
-1.1
carbon source
Casamino-acids
-0.6
+0.0
-0.5
-0.1
-1.2
phage
TP7
+0.5
-0.7
+0.1
+0.0
-2.0
phage
Bas67
-0.2
-0.9
+0.4
-0.1
-0.8
phage
Bas09
-0.6
-0.6
-0.4
+0.2
+0.3
phage
TP12
-1.0
-0.6
+0.1
-0.0
+0.4
no phage control
Control_ECOR27
+0.2
+0.2
-0.2
+0.1
-1.3
carbon source
D-Glucose
-0.3
+0.1
+0.0
-0.4
+0.0
phage
Bas69
+0.6
-0.3
-1.1
+0.3
+0.0
carbon source
Sodium-DL-Lactate
-0.4
-0.2
+0.3
-0.2
+0.1
phage
K5
-1.3
+0.4
+0.1
+0.2
+0.4
phage
TP12
-0.5
+0.6
+0.2
+0.2
-0.6
carbon source
L-Arabinose
-0.5
-1.0
+0.6
+0.3
+0.6
carbon source
D-Glucose
+0.1
+0.2
-0.1
-0.1
+0.1
phage
Bas67
-0.0
+0.7
+0.2
+0.1
-0.6
phage
TP2
+0.8
+0.8
+0.3
-0.2
-1.0
carbon source
Casamino-acids
+0.5
+1.1
+0.0
-0.5
-0.4
phage
K5
-0.1
+1.0
+0.5
+0.5
-0.9
carbon source
Sodium-DL-Lactate
-0.0
-0.0
+1.1
+0.3
+0.1
carbon source
L-Rhamnose
-0.4
+0.2
+0.7
+0.3
+0.9
carbon source
L-Rhamnose
-0.3
+0.8
+0.5
+0.5
+0.6
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