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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR27
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500 nt
yedK and yedF are separated by 106 nucleotides
yedF and yedE overlap by 4 nucleotides
yedE and yedD are separated by 186 nucleotides
yedD and amyA are separated by 33 nucleotides
NOLOHH_16355: yedK - Abasic site processing protein YedK, at 3,221,006 to 3,221,674
yedK
NOLOHH_16360: yedF - sulfurtransferase-like selenium metabolism protein YedF, at 3,221,781 to 3,222,014
yedF
NOLOHH_16365: yedE - selenium metabolism membrane protein YedE/FdhT, at 3,222,011 to 3,223,216
yedE
NOLOHH_16370: yedD - lipoprotein, at 3,223,403 to 3,223,816
yedD
NOLOHH_16375: amyA - alpha-amylase, at 3,223,850 to 3,225,337
amyA
Group
Condition
NOLOHH
_16355
NOLOHH
_16360
NOLOHH
_16365
NOLOHH
_16370
NOLOHH
_16375
yedK
yedF
yedE
yedD
amyA
carbon source
Casamino-acids
-4.8
+0.6
+0.1
+0.6
-0.3
phage
Bas69
+0.0
-0.5
-1.0
-1.7
-0.0
phage
TP12
-2.0
-0.6
+0.2
-0.6
-0.1
phage
Bas67
-0.4
-1.1
-0.5
-0.5
-0.3
carbon source
L-Arabinose
-0.3
-1.9
+0.5
+0.4
-0.7
phage
Bas09
-0.6
-0.9
+0.2
+0.0
-0.2
no phage control
Control_ECOR27
-0.5
+0.4
-0.8
-0.2
-0.2
phage
RB49
+0.3
-0.8
-0.2
-0.1
-0.5
phage
Bas67
+0.4
-0.4
-0.2
-0.8
+0.0
phage
K5
+0.1
-0.3
+0.0
-0.3
-0.3
carbon source
Casamino-acids
+0.1
+0.9
-0.6
-0.3
-0.2
phage
TP12
+0.5
+0.5
-0.3
-0.3
-0.4
phage
TP7
+0.3
+0.5
+0.1
-0.4
-0.6
carbon source
D-Glucose
+0.7
-0.7
-0.0
+0.2
-0.1
phage
TP2
+1.4
-0.4
-0.6
+0.3
-0.4
carbon source
L-Arabinose
+0.6
+0.3
-0.4
+0.7
-0.5
phage
K5
-0.5
+0.9
+0.1
+0.4
-0.2
carbon source
Sodium-DL-Lactate
+0.8
-0.3
-0.1
+0.4
+0.1
carbon source
D-Glucose
+0.3
+0.6
+0.1
+0.2
+0.3
carbon source
Sodium-DL-Lactate
+0.9
+0.3
+0.2
+0.1
-0.1
carbon source
L-Rhamnose
+1.4
+1.6
-0.1
-1.1
-0.2
carbon source
L-Rhamnose
+1.3
+0.3
-0.5
+0.4
+0.4
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