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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR27
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Top 22 experiments (either direction), sorted by average fitness
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500 nt
sanA and cdd are separated by 149 nucleotides
cdd and yohK are separated by 129 nucleotides
yohK and yohJ overlap by 4 nucleotides
yohJ and dusC are separated by 238 nucleotides
NOLOHH_15135: sanA - outer membrane permeability protein SanA, at 2,970,522 to 2,971,241
sanA
NOLOHH_15140: cdd - cytidine deaminase, at 2,971,391 to 2,972,275
cdd
NOLOHH_15145: yohK - CidB/LrgB family autolysis modulator, at 2,972,405 to 2,973,100
yohK
NOLOHH_15150: yohJ - UPF0299 membrane protein YohJ, at 2,973,097 to 2,973,495
yohJ
NOLOHH_15155: dusC - tRNA dihydrouridine(16) synthase DusC, at 2,973,734 to 2,974,684
dusC
Group
Condition
NOLOHH
_15135
NOLOHH
_15140
NOLOHH
_15145
NOLOHH
_15150
NOLOHH
_15155
sanA
cdd
yohK
yohJ
dusC
carbon source
L-Rhamnose
-0.8
-0.7
+0.1
-0.1
-0.5
carbon source
Casamino-acids
-0.4
-1.0
-0.1
-0.4
+0.0
carbon source
Sodium-DL-Lactate
-0.8
-0.1
-0.0
-0.3
+0.1
phage
Bas67
-0.2
-0.6
-0.4
+0.2
-0.1
phage
Bas09
-0.3
+0.5
-0.9
+0.0
+0.2
carbon source
L-Rhamnose
-0.6
+0.0
-0.1
+0.1
-0.0
phage
K5
-0.0
-0.1
-0.0
-0.5
+0.2
carbon source
D-Glucose
-0.1
-0.6
+0.3
+0.0
-0.2
no phage control
Control_ECOR27
-0.5
+0.0
-0.1
+0.1
-0.0
carbon source
Sodium-DL-Lactate
-0.7
+0.5
-0.2
-0.0
+0.1
carbon source
Casamino-acids
-0.4
+0.3
-0.4
-0.2
+0.3
phage
TP12
+0.2
+0.3
-0.4
-0.2
-0.1
phage
Bas67
+0.3
+0.5
-0.8
-0.3
+0.1
phage
K5
+0.1
+0.6
-0.4
-0.3
+0.0
carbon source
D-Glucose
-0.3
+0.4
-0.2
-0.1
+0.3
carbon source
L-Arabinose
-0.2
-0.3
+0.4
+0.1
+0.4
phage
Bas69
+0.8
+0.7
-1.2
-0.2
+0.1
phage
TP2
+1.3
-0.0
-0.4
-0.1
+0.2
phage
TP12
-0.0
+0.8
-0.1
+0.5
-0.2
carbon source
L-Arabinose
+0.2
-0.1
+0.4
+0.6
+0.2
phage
RB49
-0.0
+1.4
-0.1
+0.4
-0.3
phage
TP7
+0.5
+0.3
+0.2
+0.7
-0.2
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