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Cofit
Fitness for 5 genes in
Escherichia coli ECOR27
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Top 22 experiments (either direction), sorted by average fitness
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500 nt
cscK and cscB are separated by 71 nucleotides
cscB and Arg_trna are separated by 440 nucleotides
Arg_trna and yfdC are separated by 75 nucleotides
yfdC and mlaA are separated by 293 nucleotides
NOLOHH_14150: cscK - aminoimidazole riboside kinase, at 2,752,967 to 2,753,881
cscK
NOLOHH_14155: cscB - Sucrose permease, at 2,753,953 to 2,755,200
cscB
NOLOHH_14160: Arg_trna - tRNA-Arg(cct), at 2,755,641 to 2,755,715
_trna
NOLOHH_14165: yfdC - Inner membrane protein YfdC, at 2,755,791 to 2,756,723
yfdC
NOLOHH_14170: mlaA - phospholipid-binding lipoprotein MlaA, at 2,757,017 to 2,757,772
mlaA
Group
Condition
NOLOHH
_14150
NOLOHH
_14155
NOLOHH
_14160
NOLOHH
_14165
NOLOHH
_14170
cscK
cscB
Arg_trna
yfdC
mlaA
carbon source
L-Rhamnose
-0.2
-0.0
-7.5
+0.4
-0.4
phage
K5
-0.3
-0.3
-2.4
-0.2
-1.7
phage
TP2
+0.0
+0.0
-2.8
+0.4
-1.0
phage
K5
+0.0
+0.3
-1.8
-0.1
-1.3
phage
Bas69
+0.0
+0.2
-2.6
+0.4
-1.0
carbon source
L-Rhamnose
-0.2
-0.6
-0.7
+0.1
+0.2
phage
TP12
-0.0
+0.1
-0.1
-0.1
-0.7
phage
TP7
-0.2
-0.6
+0.3
-0.1
-0.2
phage
RB49
+0.0
-0.1
-0.7
-0.1
+0.3
phage
TP12
-0.3
-0.0
-0.2
+0.2
-0.1
phage
Bas67
-0.1
-0.1
-0.4
-0.0
+0.2
phage
Bas09
-0.4
-0.0
-0.1
+0.1
+0.1
carbon source
Casamino-acids
-0.1
-0.2
+0.0
+0.0
+0.0
phage
Bas67
-0.2
-0.2
+0.1
+0.1
+0.1
no phage control
Control_ECOR27
+0.0
-0.6
+0.2
+0.3
+0.1
carbon source
D-Glucose
-0.4
-0.4
+0.8
+0.1
+0.3
carbon source
Sodium-DL-Lactate
+0.1
-0.5
+0.7
+0.2
+0.1
carbon source
Casamino-acids
+0.1
+0.3
+0.0
+0.2
+0.0
carbon source
L-Arabinose
-0.3
+0.5
+0.0
+0.2
+0.3
carbon source
D-Glucose
-0.5
+0.1
+1.0
+0.2
+0.0
carbon source
L-Arabinose
+0.3
+0.0
+0.3
+0.1
+0.3
carbon source
Sodium-DL-Lactate
-0.2
-0.0
+1.2
+0.1
+0.3
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