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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR27
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Top 22 experiments (either direction), sorted by average fitness
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500 nt
vapB and vapC overlap by 1 nucleotides
vapC and ypfJ are separated by 146 nucleotides
ypfJ and tmcA are separated by 14 nucleotides
tmcA and ypfH are separated by 73 nucleotides
NOLOHH_13595: vapB - toxin-antitoxin system antitoxin VapB, at 2,641,208 to 2,641,474
vapB
NOLOHH_13600: vapC - VapC toxin family PIN domain ribonuclease, at 2,641,474 to 2,641,872
vapC
NOLOHH_13605: ypfJ - Uncharacterized protein YpfJ, at 2,642,019 to 2,642,882
ypfJ
NOLOHH_13610: tmcA - tRNA cytosine(34) acetyltransferase TmcA, at 2,642,897 to 2,644,912
tmcA
NOLOHH_13615: ypfH - esterase, at 2,644,986 to 2,645,684
ypfH
Group
Condition
NOLOHH
_13595
NOLOHH
_13600
NOLOHH
_13605
NOLOHH
_13610
NOLOHH
_13615
vapB
vapC
ypfJ
tmcA
ypfH
carbon source
Casamino-acids
-0.6
-0.9
+0.1
-0.6
+0.3
phage
K5
-0.5
-0.2
-0.1
-0.0
-0.7
phage
Bas67
-0.6
+0.1
-0.2
+0.1
-0.0
carbon source
L-Arabinose
-0.4
-0.5
+0.4
+0.1
-0.1
phage
TP12
-0.1
+0.1
-0.0
-0.1
-0.3
phage
TP7
-0.1
-0.4
+0.2
+0.2
-0.3
phage
Bas67
+0.4
-0.3
-0.3
+0.1
-0.2
phage
TP2
+0.3
+0.0
+0.1
+0.8
-1.4
no phage control
Control_ECOR27
+0.2
-0.2
+0.0
-0.1
-0.0
phage
K5
+0.5
-0.2
-0.1
-0.4
+0.1
phage
Bas09
+0.2
-0.4
+0.0
+0.2
+0.0
phage
RB49
+0.3
-0.3
+0.1
+0.1
-0.1
phage
TP12
+0.1
-0.2
-0.0
+0.2
-0.1
carbon source
D-Glucose
-0.2
-0.1
+0.0
+0.1
+0.3
carbon source
Sodium-DL-Lactate
+0.1
-0.1
-0.0
-0.2
+0.4
carbon source
Sodium-DL-Lactate
+0.0
-0.0
+0.1
+0.1
+0.2
carbon source
L-Rhamnose
+0.6
-0.1
-0.1
-0.1
+0.2
phage
Bas69
+0.3
+0.2
+0.0
+0.5
-0.6
carbon source
Casamino-acids
+0.5
-0.2
+0.1
+0.3
-0.1
carbon source
L-Rhamnose
+0.3
-0.3
+0.0
+0.0
+0.5
carbon source
L-Arabinose
+0.6
-0.1
+0.6
+0.4
+0.1
carbon source
D-Glucose
+0.4
+0.1
-0.0
+0.5
+0.7
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