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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR27
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Top 22 experiments (either direction), sorted by average fitness
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500 nt
manZ and dgaE are separated by 3 nucleotides
dgaE and NOLOHH_11220 overlap by 14 nucleotides
NOLOHH_11220 and loiP are separated by 55 nucleotides
loiP and tkt are separated by 277 nucleotides
NOLOHH_11210: manZ - PTS fructose transporter subunit IID, at 2,171,583 to 2,172,440
manZ
NOLOHH_11215: dgaE - D-glucosaminate-6-phosphate ammonia lyase, at 2,172,444 to 2,173,553
dgaE
NOLOHH_11220: NOLOHH_11220 - 2-dehydro-3-deoxy-phosphogluconate aldolase, at 2,173,540 to 2,174,283
_11220
NOLOHH_11225: loiP - metalloprotease LoiP, at 2,174,339 to 2,175,097
loiP
NOLOHH_11230: tkt - transketolase, at 2,175,375 to 2,177,366
tkt
Group
Condition
NOLOHH
_11210
NOLOHH
_11215
NOLOHH
_11220
NOLOHH
_11225
NOLOHH
_11230
manZ
dgaE
loiP
tkt
carbon source
L-Arabinose
-0.3
-0.1
+0.0
+0.1
-4.1
carbon source
L-Arabinose
-0.1
-0.2
-0.2
-0.2
-3.4
carbon source
L-Rhamnose
+0.1
-0.1
+0.2
-0.0
-1.1
phage
TP7
+0.1
-0.1
+0.3
-0.1
-0.9
phage
Bas69
+0.2
-0.2
+0.0
-0.0
-0.6
phage
TP12
-0.1
-0.3
+0.1
-0.0
-0.3
carbon source
Casamino-acids
-0.2
+0.2
-0.0
+0.1
-0.6
carbon source
Casamino-acids
-0.1
-0.1
-0.0
-0.1
-0.3
no phage control
Control_ECOR27
-0.0
+0.0
+0.1
-0.1
-0.6
phage
TP2
-0.1
-0.1
+0.2
+0.5
-1.1
carbon source
D-Glucose
-0.0
+0.0
+0.0
+0.0
-0.5
phage
K5
-0.0
+0.0
+0.0
-0.0
-0.4
carbon source
Sodium-DL-Lactate
-0.0
-0.0
+0.0
-0.1
-0.1
phage
Bas67
+0.0
-0.1
+0.2
+0.0
-0.3
phage
RB49
-0.1
-0.1
+0.2
+0.2
-0.3
carbon source
D-Glucose
+0.1
-0.3
+0.1
+0.0
+0.1
carbon source
L-Rhamnose
+0.3
+0.1
-0.0
+0.1
-0.3
phage
K5
-0.0
-0.1
+0.0
+0.2
+0.1
phage
Bas09
-0.0
+0.1
+0.2
-0.1
+0.1
phage
Bas67
+0.0
-0.2
+0.1
+0.1
+0.2
carbon source
Sodium-DL-Lactate
-0.0
-0.0
-0.1
-0.1
+0.9
phage
TP12
+0.1
-0.1
-0.1
+0.2
+1.1
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