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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR27
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Top 22 experiments (either direction), sorted by average fitness
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500 nt
ebgA and ebgR are separated by 183 nucleotides
ebgR and ygjH are separated by 218 nucleotides
ygjH and ygjG are separated by 41 nucleotides
ygjG and aer are separated by 306 nucleotides
NOLOHH_10400: ebgA - beta-galactosidase subunit alpha, at 2,007,103 to 2,010,195
ebgA
NOLOHH_10405: ebgR - transcriptional regulator EbgR, at 2,010,379 to 2,011,362
ebgR
NOLOHH_10410: ygjH - tRNA-binding protein, at 2,011,581 to 2,011,913
ygjH
NOLOHH_10415: ygjG - putrescine aminotransferase, at 2,011,955 to 2,013,445
ygjG
NOLOHH_10420: aer - aerotaxis sensor receptor Aer, at 2,013,752 to 2,015,272
aer
Group
Condition
NOLOHH
_10400
NOLOHH
_10405
NOLOHH
_10410
NOLOHH
_10415
NOLOHH
_10420
ebgA
ebgR
ygjH
ygjG
aer
carbon source
Casamino-acids
-0.1
-1.4
+0.1
-0.2
+0.0
phage
Bas67
+0.1
-0.6
-0.2
+0.1
-0.1
phage
TP2
-0.1
-0.3
-0.1
+0.2
-0.4
phage
Bas67
+0.0
-0.3
-0.3
-0.1
-0.0
carbon source
Sodium-DL-Lactate
-0.0
+0.0
-0.4
-0.2
+0.0
carbon source
Casamino-acids
-0.0
-0.3
-0.2
-0.0
+0.1
carbon source
L-Arabinose
-0.2
-0.0
+0.0
+0.0
-0.4
phage
K5
+0.0
-0.2
-0.1
-0.1
-0.1
phage
TP12
-0.0
+0.0
-0.3
+0.0
+0.0
phage
Bas09
+0.1
-0.5
-0.1
+0.2
+0.0
phage
TP12
+0.1
-0.1
-0.0
-0.1
-0.1
carbon source
D-Glucose
+0.2
-0.1
+0.1
-0.2
-0.1
carbon source
Sodium-DL-Lactate
-0.1
-0.0
+0.0
-0.1
+0.1
carbon source
L-Rhamnose
-0.0
+0.4
-0.1
-0.2
-0.1
carbon source
D-Glucose
-0.1
+0.0
+0.0
-0.0
+0.0
no phage control
Control_ECOR27
+0.2
-0.1
-0.0
+0.1
-0.1
carbon source
L-Rhamnose
-0.1
+0.2
+0.0
-0.2
+0.2
phage
RB49
+0.0
+0.3
-0.1
+0.1
-0.2
phage
K5
+0.1
+0.0
+0.0
+0.1
+0.1
phage
TP7
+0.1
+0.2
-0.1
+0.1
+0.1
phage
Bas69
+0.1
-0.0
+0.3
-0.1
+0.2
carbon source
L-Arabinose
+0.1
+0.3
-0.0
-0.0
+0.0
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