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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR27
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Top 22 experiments (either direction), sorted by average fitness
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500 nt
yhhY and yhhX are separated by 331 nucleotides
yhhX and yhhW are separated by 122 nucleotides
yhhW and gntR are separated by 223 nucleotides
gntR and gntK are separated by 138 nucleotides
NOLOHH_08615: yhhY - N-acetyltransferase, at 1,664,841 to 1,665,329
yhhY
NOLOHH_08625: yhhX - oxidoreductase, at 1,665,661 to 1,666,698
yhhX
NOLOHH_08630: yhhW - quercetin 2,3-dioxygenase, at 1,666,821 to 1,667,516
yhhW
NOLOHH_08635: gntR - gluconate operon transcriptional repressor GntR, at 1,667,740 to 1,668,735
gntR
NOLOHH_08640: gntK - gluconokinase, at 1,668,874 to 1,669,401
gntK
Group
Condition
NOLOHH
_08615
NOLOHH
_08625
NOLOHH
_08630
NOLOHH
_08635
NOLOHH
_08640
yhhY
yhhX
yhhW
gntR
gntK
phage
TP12
-0.2
+0.1
-0.4
-0.1
-0.2
carbon source
L-Arabinose
-0.0
-0.5
-0.2
+0.1
-0.1
carbon source
L-Rhamnose
-0.0
+0.1
+0.1
-0.4
-0.3
carbon source
L-Rhamnose
-0.1
+0.0
+0.2
-0.3
-0.1
carbon source
Casamino-acids
+0.0
+0.0
-0.1
-0.3
+0.1
phage
Bas67
-0.0
-0.0
-0.1
-0.4
+0.2
phage
K5
-0.2
+0.2
-0.0
-0.1
-0.1
carbon source
Casamino-acids
+0.0
+0.0
+0.0
-0.2
-0.0
no phage control
Control_ECOR27
+0.1
+0.0
+0.0
-0.2
+0.0
phage
TP12
+0.0
-0.1
+0.1
-0.2
+0.1
phage
Bas67
-0.0
+0.0
-0.0
-0.3
+0.2
phage
Bas09
+0.1
+0.0
-0.0
-0.1
-0.0
carbon source
D-Glucose
-0.3
+0.1
-0.1
+0.1
+0.0
phage
K5
-0.1
+0.1
+0.1
-0.4
+0.3
carbon source
D-Glucose
+0.2
-0.2
+0.2
-0.1
+0.1
carbon source
Sodium-DL-Lactate
+0.0
-0.1
+0.1
+0.0
+0.1
carbon source
L-Arabinose
-0.0
+0.1
-0.2
-0.0
+0.3
phage
TP7
-0.1
+0.1
+0.1
+0.0
+0.1
phage
RB49
+0.1
+0.1
+0.0
+0.1
+0.0
carbon source
Sodium-DL-Lactate
+0.1
+0.1
+0.0
+0.0
+0.1
phage
TP2
-0.1
+0.2
+0.2
+0.0
+0.3
phage
Bas69
+0.3
+0.1
-0.3
+0.3
+0.7
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