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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR27
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Top 22 experiments (either direction), sorted by average fitness
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500 nt
nikD and nikC overlap by 1 nucleotides
nikC and nikB overlap by 4 nucleotides
nikB and nikA overlap by 1 nucleotides
nikA and acpT are separated by 110 nucleotides
NOLOHH_08430: nikD - nickel import ATP-binding protein NikD, at 1,629,457 to 1,630,221
nikD
NOLOHH_08435: nikC - nickel ABC transporter permease subunit NikC, at 1,630,221 to 1,631,054
nikC
NOLOHH_08440: nikB - nickel ABC transporter permease subunit NikB, at 1,631,051 to 1,631,995
nikB
NOLOHH_08445: nikA - nickel ABC transporter substrate-binding protein, at 1,631,995 to 1,633,569
nikA
NOLOHH_08450: acpT - 4'-phosphopantetheinyl transferase AcpT, at 1,633,680 to 1,634,267
acpT
Group
Condition
NOLOHH
_08430
NOLOHH
_08435
NOLOHH
_08440
NOLOHH
_08445
NOLOHH
_08450
nikD
nikC
nikB
nikA
acpT
carbon source
L-Rhamnose
-0.2
-0.3
-0.4
+0.0
-0.0
carbon source
D-Glucose
+0.1
-0.2
-0.5
-0.2
-0.0
carbon source
Casamino-acids
-0.4
+0.1
-0.0
-0.1
-0.1
phage
TP12
-0.0
-0.0
+0.1
-0.3
-0.1
carbon source
L-Arabinose
-0.2
+0.1
+0.1
+0.0
-0.2
carbon source
L-Rhamnose
+0.3
-0.0
-0.3
+0.0
-0.1
carbon source
Sodium-DL-Lactate
+0.3
-0.1
-0.3
+0.0
-0.2
carbon source
Casamino-acids
+0.1
-0.1
-0.1
+0.0
-0.1
phage
RB49
+0.3
+0.0
-0.0
+0.1
-0.3
phage
Bas67
+0.1
+0.1
-0.1
+0.1
-0.2
phage
Bas69
-0.1
-0.2
+0.3
+0.2
-0.1
phage
Bas67
+0.0
+0.1
+0.1
+0.1
-0.2
carbon source
L-Arabinose
-0.0
+0.1
+0.3
+0.0
-0.3
phage
TP2
+0.3
-0.0
+0.2
-0.0
-0.2
carbon source
Sodium-DL-Lactate
+0.1
+0.1
-0.0
+0.1
-0.1
phage
Bas09
-0.0
+0.1
+0.2
+0.1
-0.2
phage
K5
-0.1
+0.0
+0.3
+0.2
-0.1
no phage control
Control_ECOR27
-0.1
+0.0
+0.2
+0.1
+0.1
phage
TP7
+0.1
+0.1
+0.1
+0.1
+0.1
phage
TP12
+0.2
+0.1
+0.2
-0.1
+0.1
carbon source
D-Glucose
+0.3
+0.1
+0.2
+0.2
-0.1
phage
K5
+0.2
+0.1
+0.2
+0.1
+0.3
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