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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR27
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Top 22 experiments (either direction), sorted by average fitness
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500 nt
yhiI and rbbA overlap by 4 nucleotides
rbbA and NOLOHH_08410 overlap by 1 nucleotides
NOLOHH_08410 and hicB are separated by 330 nucleotides
hicB and nikE are separated by 119 nucleotides
NOLOHH_08400: yhiI - Uncharacterized protein YhiI, at 1,622,514 to 1,623,581
yhiI
NOLOHH_08405: rbbA - ribosome-associated ATPase/putative transporter RbbA, at 1,623,578 to 1,626,313
rbbA
NOLOHH_08410: NOLOHH_08410 - ABC-2 family transporter protein, at 1,626,313 to 1,627,437
_08410
NOLOHH_08415: hicB - toxin-antitoxin system HicB family antitoxin, at 1,627,768 to 1,628,127
hicB
NOLOHH_08420: nikE - nickel import ATP-binding protein NikE, at 1,628,247 to 1,628,648
nikE
Group
Condition
NOLOHH
_08400
NOLOHH
_08405
NOLOHH
_08410
NOLOHH
_08415
NOLOHH
_08420
yhiI
rbbA
hicB
nikE
carbon source
L-Rhamnose
-0.2
-0.2
+0.0
+0.1
-0.4
phage
Bas69
-0.1
+0.1
-0.2
-0.3
-0.2
phage
TP7
+0.0
-0.1
-0.3
-0.2
-0.1
carbon source
L-Arabinose
-0.0
-0.1
-0.1
+0.0
-0.4
carbon source
L-Rhamnose
-0.1
-0.1
-0.4
-0.1
+0.1
no phage control
Control_ECOR27
-0.2
-0.1
+0.1
-0.1
-0.1
phage
K5
+0.1
+0.0
-0.2
-0.1
-0.1
carbon source
Casamino-acids
-0.1
-0.0
+0.2
-0.2
-0.2
phage
TP2
-0.0
-0.1
+0.0
+0.1
-0.1
phage
RB49
-0.0
+0.0
+0.0
-0.0
-0.2
carbon source
Casamino-acids
-0.1
-0.0
+0.0
-0.1
+0.0
carbon source
Sodium-DL-Lactate
+0.1
+0.0
-0.1
-0.1
-0.0
carbon source
D-Glucose
-0.2
+0.0
+0.1
+0.0
-0.1
phage
Bas09
+0.0
-0.0
-0.0
+0.1
-0.2
phage
Bas67
+0.0
+0.1
-0.1
-0.1
+0.0
phage
Bas67
-0.0
+0.0
-0.1
+0.0
+0.0
phage
TP12
+0.1
+0.1
-0.1
+0.1
-0.1
carbon source
L-Arabinose
-0.0
-0.1
-0.2
+0.3
+0.1
phage
K5
+0.1
+0.0
-0.1
+0.1
+0.0
phage
TP12
+0.1
+0.1
-0.1
+0.0
+0.1
carbon source
Sodium-DL-Lactate
-0.1
+0.1
-0.0
+0.2
+0.2
carbon source
D-Glucose
+0.1
-0.0
+0.2
+0.1
+0.2
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