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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR27
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500 nt
nrfC and nrfB overlap by 4 nucleotides
nrfB and nrfA are separated by 44 nucleotides
nrfA and ytcB are separated by 96 nucleotides
ytcB and acs are separated by 239 nucleotides
NOLOHH_05060: nrfC - cytochrome c nitrite reductase Fe-S protein, at 928,076 to 928,747
nrfC
NOLOHH_05065: nrfB - cytochrome c nitrite reductase pentaheme subunit, at 928,744 to 929,310
nrfB
NOLOHH_05070: nrfA - ammonia-forming nitrite reductase cytochrome c552 subunit, at 929,355 to 930,791
nrfA
NOLOHH_05075: ytcB - Protein YtcB, at 930,888 to 930,944
ytcB
NOLOHH_05080: acs - acetate--CoA ligase, at 931,184 to 933,142
acs
Group
Condition
NOLOHH
_05060
NOLOHH
_05065
NOLOHH
_05070
NOLOHH
_05075
NOLOHH
_05080
nrfC
nrfB
nrfA
ytcB
acs
carbon source
L-Arabinose
-0.4
+0.1
-0.3
-1.1
+0.1
carbon source
L-Arabinose
-0.5
-0.2
-0.0
-0.7
-0.2
carbon source
L-Rhamnose
-0.3
-0.2
-0.0
-0.5
-0.3
phage
TP12
+0.2
-0.1
+0.0
-1.2
-0.1
carbon source
L-Rhamnose
+0.0
+0.0
-0.1
-0.5
-0.3
phage
Bas67
-0.1
+0.0
-0.1
-0.4
-0.0
carbon source
Sodium-DL-Lactate
+0.0
+0.0
-0.1
-0.5
+0.1
carbon source
D-Glucose
-0.1
-0.1
+0.0
-0.2
+0.0
carbon source
Sodium-DL-Lactate
+0.2
-0.1
-0.0
-0.3
-0.1
carbon source
D-Glucose
-0.1
-0.0
-0.1
+0.2
-0.1
phage
RB49
-0.1
+0.1
+0.2
-0.1
-0.1
no phage control
Control_ECOR27
+0.1
-0.0
+0.1
-0.1
+0.0
phage
Bas09
-0.2
+0.2
+0.1
-0.0
-0.0
phage
K5
-0.2
-0.0
+0.1
+0.4
-0.0
phage
TP12
-0.1
+0.2
+0.1
+0.1
-0.0
phage
K5
-0.2
+0.3
+0.1
+0.1
-0.1
carbon source
Casamino-acids
-0.1
+0.2
+0.1
+0.4
-0.2
phage
TP7
-0.1
+0.2
+0.2
+0.0
+0.0
phage
Bas69
+0.1
+0.1
-0.1
+0.3
+0.0
phage
Bas67
+0.2
+0.1
+0.1
+0.1
+0.0
phage
TP2
-0.1
+0.2
+0.2
+0.6
+0.1
carbon source
Casamino-acids
+0.4
+0.0
+0.2
+0.9
-0.2
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