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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR27
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500 nt
cadA and dtpC are separated by 58 nucleotides
dtpC and lysS are separated by 236 nucleotides
lysS and ghoT are separated by 118 nucleotides
ghoT and ghoS are separated by 27 nucleotides
NOLOHH_04740: cadA - lysine decarboxylase CadA, at 861,005 to 863,152
cadA
NOLOHH_04745: dtpC - dipeptide/tripeptide permease DtpC, at 863,211 to 864,668
dtpC
NOLOHH_04750: lysS - lysine--tRNA ligase, at 864,905 to 866,422
lysS
NOLOHH_04755: ghoT - type V toxin-antitoxin system toxin GhoT, at 866,541 to 866,714
ghoT
NOLOHH_04760: ghoS - type V toxin-antitoxin system endoribonuclease antitoxin GhoS, at 866,742 to 867,038
ghoS
Group
Condition
NOLOHH
_04740
NOLOHH
_04745
NOLOHH
_04750
NOLOHH
_04755
NOLOHH
_04760
cadA
dtpC
lysS
ghoT
ghoS
phage
TP2
+0.0
-0.0
+0.1
-2.3
+0.3
phage
TP12
-0.0
-0.1
-0.1
-1.4
+0.5
phage
Bas69
-0.1
-0.1
-0.0
-1.1
+0.5
phage
Bas67
-0.0
-0.0
-0.1
-0.9
+0.2
carbon source
D-Glucose
+0.1
-0.0
+0.1
-0.4
-0.5
carbon source
L-Arabinose
-0.0
+0.1
-0.0
+0.2
-0.8
phage
TP7
+0.0
-0.0
-0.1
+0.3
-0.6
phage
Bas67
-0.1
+0.0
+0.0
-0.0
-0.3
phage
RB49
-0.0
+0.1
+0.0
+0.1
-0.6
phage
K5
-0.0
-0.1
-0.0
-0.0
-0.2
carbon source
Casamino-acids
-0.1
+0.1
-0.1
-0.1
-0.2
carbon source
D-Glucose
-0.0
-0.0
+0.0
-0.5
+0.2
phage
TP12
-0.2
-0.1
+0.1
-0.2
+0.2
carbon source
L-Rhamnose
+0.0
+0.0
-0.3
+0.3
-0.2
carbon source
L-Rhamnose
-0.0
-0.0
-0.1
+0.0
+0.0
carbon source
Sodium-DL-Lactate
-0.0
-0.0
-0.0
-0.0
+0.1
phage
K5
-0.1
-0.1
+0.1
-0.1
+0.4
carbon source
L-Arabinose
-0.1
-0.1
-0.1
+0.5
+0.1
carbon source
Sodium-DL-Lactate
-0.0
+0.1
+0.0
+0.3
-0.0
carbon source
Casamino-acids
-0.0
+0.1
-0.1
+0.6
-0.0
phage
Bas09
-0.1
+0.1
+0.0
+0.3
+0.3
no phage control
Control_ECOR27
+0.0
-0.1
+0.1
+0.6
+0.4
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