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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR27
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500 nt
cadC and cadB are separated by 365 nucleotides
cadB and cadA are separated by 79 nucleotides
cadA and dtpC are separated by 58 nucleotides
dtpC and lysS are separated by 236 nucleotides
NOLOHH_04730: cadC - lysine decarboxylation/transport transcriptional activator CadC, at 857,687 to 859,225
cadC
NOLOHH_04735: cadB - cadaverine/lysine antiporter, at 859,591 to 860,925
cadB
NOLOHH_04740: cadA - lysine decarboxylase CadA, at 861,005 to 863,152
cadA
NOLOHH_04745: dtpC - dipeptide/tripeptide permease DtpC, at 863,211 to 864,668
dtpC
NOLOHH_04750: lysS - lysine--tRNA ligase, at 864,905 to 866,422
lysS
Group
Condition
NOLOHH
_04730
NOLOHH
_04735
NOLOHH
_04740
NOLOHH
_04745
NOLOHH
_04750
cadC
cadB
cadA
dtpC
lysS
carbon source
L-Arabinose
-0.3
-0.2
-0.1
-0.1
-0.1
phage
TP7
-0.1
-0.2
+0.0
-0.0
-0.1
phage
TP12
-0.0
-0.3
-0.0
-0.1
-0.1
phage
K5
-0.1
-0.2
-0.1
-0.1
+0.1
phage
Bas69
-0.1
-0.0
-0.1
-0.1
-0.0
phage
TP12
-0.0
-0.1
-0.2
-0.1
+0.1
carbon source
L-Arabinose
-0.1
-0.3
-0.0
+0.1
-0.0
carbon source
L-Rhamnose
+0.0
+0.0
+0.0
+0.0
-0.3
phage
K5
-0.1
+0.0
-0.0
-0.1
-0.0
carbon source
L-Rhamnose
+0.0
-0.1
-0.0
-0.0
-0.1
phage
Bas67
-0.1
+0.0
-0.1
+0.0
+0.0
carbon source
Casamino-acids
-0.0
-0.0
-0.1
+0.1
-0.1
phage
Bas67
+0.0
-0.0
-0.0
-0.0
-0.1
carbon source
Sodium-DL-Lactate
+0.0
+0.0
-0.0
-0.0
-0.0
carbon source
D-Glucose
-0.1
-0.0
+0.1
-0.0
+0.1
carbon source
D-Glucose
+0.0
-0.0
-0.0
-0.0
+0.0
phage
TP2
-0.2
+0.0
+0.0
-0.0
+0.1
phage
RB49
+0.1
-0.1
-0.0
+0.1
+0.0
carbon source
Casamino-acids
-0.1
+0.1
-0.0
+0.1
-0.1
no phage control
Control_ECOR27
-0.0
-0.1
+0.0
-0.1
+0.1
carbon source
Sodium-DL-Lactate
-0.0
+0.1
-0.0
+0.1
+0.0
phage
Bas09
+0.1
+0.0
-0.1
+0.1
+0.0
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