Fitness for 5 genes in Escherichia coli ECOR27

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500 ntlptD and surA are separated by 52 nucleotidessurA and pdxA overlap by 1 nucleotidespdxA and rsmA overlap by 4 nucleotidesrsmA and apaG are separated by 2 nucleotides NOLOHH_03165: lptD - LPS assembly protein LptD, at 550,614 to 552,968 lptD NOLOHH_03170: surA - peptidylprolyl isomerase SurA, at 553,021 to 554,307 surA NOLOHH_03175: pdxA - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 554,307 to 555,296 pdxA NOLOHH_03180: rsmA - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA, at 555,293 to 556,114 rsmA NOLOHH_03185: apaG - Co2+/Mg2+ efflux protein ApaG, at 556,117 to 556,494 apaG
Group Condition NOLOHH_03165 NOLOHH_03170 NOLOHH_03175 NOLOHH_03180 NOLOHH_03185
lptD surA pdxA rsmA apaG
carbon source Casamino-acids N.D. -2.7 -3.1 N.D. -0.0
carbon source L-Arabinose N.D. -2.7 -1.9 N.D. -0.8
carbon source L-Rhamnose N.D. -1.8 -3.2 N.D. -0.4
carbon source L-Rhamnose N.D. -1.1 -3.3 N.D. -0.6
carbon source Sodium-DL-Lactate N.D. -2.4 -2.7 N.D. +0.1
carbon source D-Glucose N.D. -1.9 -2.6 N.D. -0.1
carbon source Casamino-acids N.D. -0.9 -3.4 N.D. -0.2
carbon source Sodium-DL-Lactate N.D. -2.7 -1.0 N.D. -0.5
carbon source L-Arabinose N.D. -0.7 -1.8 N.D. -1.5
no phage control Control_ECOR27 N.D. -2.0 -0.0 N.D. -0.4
carbon source D-Glucose N.D. -0.3 -1.6 N.D. -0.2
phage Bas67 N.D. -1.1 -0.3 N.D. -0.5
phage TP12 N.D. -1.3 -0.6 N.D. +0.0
phage RB49 N.D. -1.3 +0.0 N.D. -0.6
phage Bas67 N.D. -1.3 +0.0 N.D. -0.4
phage TP12 N.D. -0.6 -0.1 N.D. -0.6
phage TP2 N.D. -1.5 +0.4 N.D. -0.2
phage K5 N.D. -0.8 -0.1 N.D. -0.3
phage Bas09 N.D. -0.9 +0.0 N.D. -0.1
phage TP7 N.D. -0.7 +0.1 N.D. +0.2
phage Bas69 N.D. -0.9 +0.4 N.D. +0.0
phage K5 N.D. -0.2 +0.1 N.D. -0.0
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