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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR27
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500 nt
nlpE and arfB are separated by 13 nucleotides
arfB and yaeQ overlap by 4 nucleotides
yaeQ and yaeP are separated by 165 nucleotides
yaeP and rof overlap by 14 nucleotides
NOLOHH_02435: nlpE - envelope stress response activation lipoprotein NlpE, at 394,410 to 395,120
nlpE
NOLOHH_02440: arfB - aminoacyl-tRNA hydrolase, at 395,134 to 395,556
arfB
NOLOHH_02445: yaeQ - Uncharacterized protein YaeQ, at 395,553 to 396,098
yaeQ
NOLOHH_02450: yaeP - YaeP family protein, at 396,264 to 396,464
yaeP
NOLOHH_02455: rof - Rho-binding antiterminator, at 396,451 to 396,711
rof
Group
Condition
NOLOHH
_02435
NOLOHH
_02440
NOLOHH
_02445
NOLOHH
_02450
NOLOHH
_02455
nlpE
arfB
yaeQ
yaeP
rof
carbon source
L-Arabinose
+0.4
-0.6
-0.1
-0.9
-1.0
carbon source
L-Arabinose
+0.1
-0.2
-0.3
+0.3
-1.0
no phage control
Control_ECOR27
-0.1
-0.4
+0.1
-0.7
+0.0
phage
TP2
+0.2
-0.3
-0.1
-0.1
-0.5
phage
K5
+0.1
-0.6
-0.2
+0.1
-0.1
carbon source
L-Rhamnose
+0.2
-0.0
+0.3
-0.1
-1.0
phage
TP12
-0.0
-0.7
+0.3
+0.1
-0.4
phage
Bas67
+0.1
+0.0
-0.1
-0.0
-0.7
carbon source
Sodium-DL-Lactate
+0.1
-0.4
+0.0
-0.1
-0.3
carbon source
L-Rhamnose
+0.3
-0.2
+0.1
-0.4
-0.3
phage
K5
+0.1
-0.1
+0.1
-0.2
-0.1
phage
Bas69
+0.1
+0.4
+0.1
-0.9
+0.2
phage
Bas09
-0.1
-0.1
+0.0
+0.1
+0.2
carbon source
D-Glucose
+0.1
-0.1
+0.0
+0.4
-0.4
carbon source
Casamino-acids
+0.1
-0.1
+0.2
+0.0
+0.1
phage
RB49
+0.1
-0.3
+0.4
+0.3
-0.1
carbon source
Sodium-DL-Lactate
+0.2
+0.1
+0.4
-0.3
+0.0
phage
TP12
+0.1
-0.5
+0.4
-0.1
+0.6
phage
Bas67
+0.1
-0.0
+0.1
+0.2
+0.2
carbon source
D-Glucose
+0.1
+0.1
+0.0
+0.0
+0.4
carbon source
Casamino-acids
+0.0
+0.2
+0.3
+0.3
-0.1
phage
TP7
-0.1
+0.1
+0.1
+0.2
+0.5
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